View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_7 (Length: 468)
Name: NF17125_low_7
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 3679640 - 3679884
Alignment:
| Q |
18 |
gtttgatttagaggtgtgtcnnnnnnnggatgagtagcaggctatgaaactcgatttaggtggtgaagttggttttaatggttgttgttctccataagtg |
117 |
Q |
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| T |
3679640 |
gtttgatttagaggtgtgtctttttttggacaagtagcaggctatggaactcgatttaggtggtgaagttagttttaatggctgttgttctc-ataagtg |
3679738 |
T |
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| Q |
118 |
ttgaaggttggtgttctttaagtgctggatgtattggtgtcttttatggtgtttcacctatatacgacacctttgttctgtaatctttaatttactgatc |
217 |
Q |
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| T |
3679739 |
ttgaaggtcggtgttctttaagtgctgaatgtattggtgtcttttatggtgtttcacctatatacgacacctttgttctgtaatctttaatttactggtc |
3679838 |
T |
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| Q |
218 |
tctatttttcttgagcaaggattaagtttttaataaattttgccgtt |
264 |
Q |
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| T |
3679839 |
tct-ttcttcttgagcaaggatcaggtttttaataaattttgccgtt |
3679884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 321 - 462
Target Start/End: Original strand, 3679940 - 3680087
Alignment:
| Q |
321 |
gcagcttcatgcaagggcagcttttgaagaagatgcctgtttaattatcttggt--------acaatgtactgaaagaagagtttggaactgtaacttcg |
412 |
Q |
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| T |
3679940 |
gcagcttcatgcaagggcagcttttgaagaagatgcctgtttaattatcttggtttggttatacaatgtactgaaagaagagtttggaactgcaacttcg |
3680039 |
T |
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| Q |
413 |
tttgagacttgttatatgatgtataaactttttctgttttgttcatttca |
462 |
Q |
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| T |
3680040 |
tttgagacttgt--tatgatgtataaactttttctgttttgttcatttca |
3680087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 3686712 - 3686754
Alignment:
| Q |
322 |
cagcttcatgcaagggcagcttttgaagaagatgcctgtttaa |
364 |
Q |
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| T |
3686712 |
cagcttcatgcaagggcaacttttgaggaagatgcctgtttaa |
3686754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 26367810 - 26367713
Alignment:
| Q |
73 |
ttaggtggtgaagttggttttaatggttgttgttctccataagtgttgaaggttggtgttctttaagtgctggatgtattggtgtcttttatggtgttt |
171 |
Q |
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| T |
26367810 |
ttaggtggtgaagttggatttgatggttgttgttct-catgggtgttgaaggcaggacttagttaagtgatgtgtgtattgatgtctttaatggtgttt |
26367713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 26367696 - 26367611
Alignment:
| Q |
175 |
ctatatacgacacctttgttctgtaatctttaatttactgatctctatttttcttgagcaaggattaagtttttaataaattttgc |
260 |
Q |
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| T |
26367696 |
ctatatacggcgtctttattttgtaatctttgatttactgatctctgttcgtcttaagcagggatacaatttttaataaattttgc |
26367611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 931825 - 931768
Alignment:
| Q |
168 |
gtttcacctatatacgacacctttgttctgtaatctttaatttactgatctctatttt |
225 |
Q |
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| T |
931825 |
gtttcacttatatacgacaactttattttgtagtctttaatttactaatctttatttt |
931768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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