View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17125_low_8 (Length: 467)
Name: NF17125_low_8
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17125_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 21 - 454
Target Start/End: Complemental strand, 30614210 - 30613777
Alignment:
| Q |
21 |
aacggtattatttagaaaagatattcaaactcttgataatacaaatgtaaagtagcattaatctcagtccttcacagcagcaaaacacatccaagacaac |
120 |
Q |
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| T |
30614210 |
aacggtattatttagaaaagatattcaaactcttgataatacaaatgtaaagtagcattaatctcagtccttcacagcagcaaaacacatccaagacaac |
30614111 |
T |
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| Q |
121 |
aactagtataaaacaaaattctattggtgtttaaaagactaaaaaaccactagccctacatcatctccataactaagattgaaacagaaataatatttgt |
220 |
Q |
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| T |
30614110 |
aactagtataaaacaaaattctattggtgtttaaaagactaaaaaaccactagtcctacatcatctccataactaagattgaaacagaagtaatatttgt |
30614011 |
T |
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| Q |
221 |
gatggaaaaaacaatattccaacaccataaaatataattcatagcatttgaggagtgtttttctttataaaccattttcaagcttcaaatttagtggaaa |
320 |
Q |
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| T |
30614010 |
gatggaaaaaacaatattccaacaccataaaatataattcatagcatttgaggagtgtttttctttataaaccattttcaagcttcaaatttagtggaaa |
30613911 |
T |
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| Q |
321 |
gacgaacattaacatgtttatctgtcgattgtctttgcattcgttgtagaatatttattcgttttagttgtaatttgaacttatctaaatttcaggttca |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30613910 |
gacgaacattaacatgtttatctgtcgattgtctttgcattcattgtagaatatttattcgttttagttgtaatttgaacttatctaaatttcaggttca |
30613811 |
T |
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| Q |
421 |
atattcatgttttcgaagttactttcatcctatg |
454 |
Q |
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| T |
30613810 |
atattcatgttttcgaagttactttcatcctatg |
30613777 |
T |
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