View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17125_low_9 (Length: 446)

Name: NF17125_low_9
Description: NF17125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17125_low_9
NF17125_low_9
[»] chr1 (3 HSPs)
chr1 (59-436)||(31231089-31231466)
chr1 (1-59)||(31231498-31231555)
chr1 (25-54)||(31231556-31231585)
[»] chr4 (3 HSPs)
chr4 (348-413)||(56329216-56329281)
chr4 (334-413)||(41496070-41496149)
chr4 (340-436)||(24899343-24899440)
[»] chr7 (1 HSPs)
chr7 (369-438)||(37486065-37486137)
[»] chr6 (2 HSPs)
chr6 (340-426)||(33293560-33293648)
chr6 (336-412)||(1825897-1825973)
[»] chr5 (1 HSPs)
chr5 (340-427)||(41364665-41364753)
[»] chr3 (1 HSPs)
chr3 (336-436)||(5411433-5411537)
[»] chr2 (1 HSPs)
chr2 (365-433)||(45134692-45134761)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 59 - 436
Target Start/End: Complemental strand, 31231466 - 31231089
Alignment:
Q  59 cgtatgaatgtatagttttgtttagttgataaatgtttgtagggtgaggccagtccactacagttttttgttcatagtttcatctgaatgtagnnnnnnn 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||           
T  31231466 cgtatgaatgtatagttttgtttagttgataaatgtttgtagggtgaggccagtccactacagttttttgttcatagtttcatttgaatgtagttttttt 31231367  T
Q  159 aattttgatgataataatggagattggatttgtgattttcgtgtactttgaggcttaaacttattgatttgtgaacatggagtatttggatgcatatttg 258  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31231366 aattttgataataataatggaaattggatttgtgattttcgtgtactttgaggcttaaactttttgatttgtgaacatggagtatttggatgcatatttg 31231267  T
Q  259 accattgtttatcacatctctatagttttcaattttggattcgaaaaaatgtgtgaatgattcatgctttctagaatatcctttgtgacgagtcattgga 358  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  31231266 accattgtttatcacatctctatatttttcaattttggattcgaaaaaatgtgtgaatgagtcatgctttctagaatatcctttgtgacaagtcattgga 31231167  T
Q  359 atgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaagaagaaattagtttgctagaata 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31231166 atgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaagaagaaattagtttgctagaata 31231089  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31231555 - 31231498
Alignment:
Q  1 ttattttatcccttagatttgttttatttctttactattaattgaacaatgaaactatc 59  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31231555 ttattttatctctt-gatttgttttatttctttactattaattgaacaatgaaactatc 31231498  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 31231585 - 31231556
Alignment:
Q  25 tatttctttactattaattgaacaatgaaa 54  Q
    ||||||||||||||||||||||||||||||    
T  31231585 tatttctttactattaattgaacaatgaaa 31231556  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 56329216 - 56329281
Alignment:
Q  348 gagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa 413  Q
    |||||||||||||| ||||||||||||||| || ||||| ||| ||||| ||||||||||||||||    
T  56329216 gagtcattggaatgtcaatgctataaataattggttggtcattataatcattatcaaatgaatgaa 56329281  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 41496070 - 41496149
Alignment:
Q  334 atatcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa 413  Q
    ||||| ||||||| |||||||| ||||| ||||||||||||||   | ||||| ||||||||| ||||||||||||||||    
T  41496070 atatcatttgtgatgagtcattagaatgtcaatgctataaatagtgggttggtcattgtaatccttatcaaatgaatgaa 41496149  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 436
Target Start/End: Original strand, 24899343 - 24899440
Alignment:
Q  340 tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatc-aaatgaatgaa-gaagaaattagtttgctagaata 436  Q
    ||||||||||||||||| |||| |||| ||||||||||  ||||||| ||||||||| | ||| |||| |||||| ||||||| ||||||| |||||||    
T  24899343 tttgtgacgagtcattgaaatgtcaatactataaataatggattggtcattgtaatcataatcaaaataaatgaatgaagaaa-tagtttgttagaata 24899440  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 438
Target Start/End: Complemental strand, 37486137 - 37486065
Alignment:
Q  369 tataaataaatgattggtgattgtaatctttatcaaatg-aatgaa-gaag-aaattagtttgctagaataat 438  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||| |||||||||    
T  37486137 tataaataaatgattggtgattgtaatcattatcaaatgaaatgaatgaagaaaattagtttgttagaataat 37486065  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 33293560 - 33293648
Alignment:
Q  340 tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatc-aaatgaatgaa-gaagaaattagtt 426  Q
    ||||||| ||||||||||||||||||||||||||||||  | ||| | ||||||||| ||||| ||||||||||| |||||| ||||||    
T  33293560 tttgtgatgagtcattggaatgccaatgctataaataatgggttgatcattgtaatcattatcgaaatgaatgaatgaagaatttagtt 33293648  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 1825897 - 1825973
Alignment:
Q  336 atcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatga 412  Q
    ||||||||||| ||||||||| |||| |||||||||||||||  | || || ||||||||| || | ||||||||||    
T  1825897 atcctttgtgatgagtcattgaaatgtcaatgctataaataatggttttgtcattgtaatcattgtgaaatgaatga 1825973  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 427
Target Start/End: Original strand, 41364665 - 41364753
Alignment:
Q  340 tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa-gaagaaattagttt 427  Q
    ||||||| || ||||| ||||  ||| |||||||| || |||||| ||||||||||| |||| ||||||||||| |||||| |||||||    
T  41364665 tttgtgatgaatcattagaatatcaaggctataaagaagtgattgatgattgtaatcattatgaaatgaatgaatgaagaatttagttt 41364753  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 436
Target Start/End: Original strand, 5411433 - 5411537
Alignment:
Q  336 atcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatca----aatgaatgaagaagaaattagtttgcta 431  Q
    ||||||| ||| ||||||||| |||||||||| |||||||||   | || | ||||||| | ||||||    |||||||||||||||| |||||||| ||    
T  5411433 atcctttatgatgagtcattgtaatgccaatgatataaataatgtagtgctcattgtaaacattatcaaatgaatgaatgaagaagaatttagtttgtta 5411532  T
Q  432 gaata 436  Q
    |||||    
T  5411533 gaata 5411537  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 433
Target Start/End: Complemental strand, 45134761 - 45134692
Alignment:
Q  365 atgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa-gaagaaattagtttgctaga 433  Q
    |||||||||||||  | ||||| |||||||||  ||||||||||||||| ||| ||||||||||| ||||    
T  45134761 atgctataaataataggttggttattgtaatcaatatcaaatgaatgaatgaataaattagtttgttaga 45134692  T

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