View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17126_high_18 (Length: 314)

Name: NF17126_high_18
Description: NF17126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17126_high_18
NF17126_high_18
[»] chr1 (1 HSPs)
chr1 (22-314)||(35696135-35696427)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 35696135 - 35696427
Alignment:
Q  22 catcatcaccaaatcatgttgtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtgggtgagtctcagccataaca 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35696135 catcataaccaaatcatgttgtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtgggtgagtctcagccataaca 35696234  T
Q  122 ccggctgctccccctccatcaatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaatgtcgatgctagcacctccct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35696235 ccggctgctccccctccatcaatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaatgtcgatgctagcacctccct 35696334  T
Q  222 tccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatggctcaatccag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35696335 tccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatggctcaatccag 35696427  T

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