View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17127_high_11 (Length: 317)

Name: NF17127_high_11
Description: NF17127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17127_high_11
NF17127_high_11
[»] chr2 (1 HSPs)
chr2 (13-317)||(32828791-32829095)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 32829095 - 32828791
Alignment:
Q  13 tatactagaaatcacggtgagtgtaatgtgggtcatgatttgaaccctgattcaggggtgaggagaagctcgcgggctaggcgtgccccggttttgcttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32829095 tatactagaaatcacggtgagtgtaatgtgggtcatgatttgaaccctgattcaggggtgaggagaagctcgcgggctaggcgtgccccggttttgcttg 32828996  T
Q  113 atgtctctcccacaccgaagaagaaacggttgaagttaggaaaggatgtagtgccgaagagtgtggagggtgataaaggtgtagggagagaaagtggggg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32828995 atgtctctcccacaccgaagaagaaacggttgaagttaggaaaggatgtagttccgaagagtgtggagggtgataaaggtgtagggagagaaagtggggg 32828896  T
Q  213 ttctggtggtgggaattggagtttgaggtcaagatcgaggggtaagaacgtggaatttgaagtgaaggaggagagggaattgagtggtaggaaaaggaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32828895 ttctggtggtgggaattggagtttgaggtcaagatcgaggggtaagaacgtggaatttgaagtgaaggaggagagggaattgagtggtaggaaaaggaag 32828796  T
Q  313 ttgtt 317  Q
    |||||    
T  32828795 ttgtt 32828791  T

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