View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17127_high_12 (Length: 300)
Name: NF17127_high_12
Description: NF17127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17127_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 1350781 - 1350494
Alignment:
| Q |
3 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacgg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
1350781 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacgg |
1350682 |
T |
|
| Q |
103 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaagttcaaaactatatatatgttcgttgaaaaggcattgaaaataaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350681 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaagttcaaaactatatatatgttcgttgaaaaggcattgaaaataaa |
1350582 |
T |
|
| Q |
203 |
ttaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
290 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350581 |
ttaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1350494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 1384435 - 1384148
Alignment:
| Q |
3 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacgg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
1384435 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacgg |
1384336 |
T |
|
| Q |
103 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaagttcaaaactatatatatgttcgttgaaaaggcattgaaaataaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384335 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaagttcaaaactatatatatgttcgttgaaaaggcattgaaaataaa |
1384236 |
T |
|
| Q |
203 |
ttaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
290 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384235 |
ttaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1384148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 1390540 - 1390253
Alignment:
| Q |
3 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
1390540 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacgg |
1390441 |
T |
|
| Q |
103 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaagttcaaaactatatatatgttcgttgaaaaggcattgaaaataaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390440 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaagttcaaaactatatatatgttcgttgaaaaggcattgaaaataaa |
1390341 |
T |
|
| Q |
203 |
ttaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
290 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390340 |
ttaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1390253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 1394786 - 1394499
Alignment:
| Q |
3 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1394786 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacgg |
1394687 |
T |
|
| Q |
103 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaagttcaaaactatatatatgttcgttgaaaaggcattgaaaataaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
1394686 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatttaagtttaaaactatatatatgttcattgaaaaggcattgaaaataaa |
1394587 |
T |
|
| Q |
203 |
ttaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
290 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1394586 |
ttaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1394499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 1358687 - 1358400
Alignment:
| Q |
3 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1358687 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacgg |
1358588 |
T |
|
| Q |
103 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaagttcaaaactatatatatgttcgttgaaaaggcattgaaaataaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1358587 |
tacacaaatcctttctgcaagtagattaaccatgacaaaccaattaaccatctaaattcaaaactatatatatgttcattgaaaaggcattgaaaataaa |
1358488 |
T |
|
| Q |
203 |
ttaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
290 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1358487 |
ttaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttggccaattgttctctg |
1358400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 1374239 - 1374117
Alignment:
| Q |
3 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1374239 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacgg |
1374140 |
T |
|
| Q |
103 |
tacacaaatcctttctgcaagta |
125 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
1374139 |
tacacaaatcctttctgcaagta |
1374117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 1373867 - 1373787
Alignment:
| Q |
210 |
tagacctcagtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
290 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1373867 |
tagacctcggtctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1373787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 7010430 - 7010315
Alignment:
| Q |
3 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacgg |
102 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
7010430 |
cttcaacacttgagaagaatcagtggctccaaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacgg |
7010331 |
T |
|
| Q |
103 |
tacacaaatcctttct |
118 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
7010330 |
tagacaaatcctttct |
7010315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 7007352 - 7007237
Alignment:
| Q |
3 |
cttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacgg |
102 |
Q |
| |
|
||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
7007352 |
cttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacgg |
7007253 |
T |
|
| Q |
103 |
tacacaaatcctttct |
118 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
7007252 |
tagacaaatcctttct |
7007237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 7009868 - 7009807
Alignment:
| Q |
225 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttc |
286 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || ||||||||||| |
|
|
| T |
7009868 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
7009807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 7006774 - 7006716
Alignment:
| Q |
225 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattg |
283 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||||| |
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| T |
7006774 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattg |
7006716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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