View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17127_high_2 (Length: 362)
Name: NF17127_high_2
Description: NF17127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17127_high_2 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 25 - 362
Target Start/End: Original strand, 5951298 - 5951635
Alignment:
| Q |
25 |
catcatcagacacaagaaatggatcatgcaacagttcttttgctgatggtctccttgctgcatttactaggcattttccaataaactcgcgtgcttctgc |
124 |
Q |
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| T |
5951298 |
catcatcagacacaagaaatggatcatgcaacagttcttttgctgatggtctccttgctgcatttactaggcattttccaataaactctcgtgcttctgc |
5951397 |
T |
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| Q |
125 |
atcttcaattcggaaaagtgttgctggtagcttaccctgaacattgaaagatagaaaaaatacttatatattatttcgagtttactagtatcattaaact |
224 |
Q |
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| T |
5951398 |
atcttcaattcggaaaagtgttgctggtagcttaccctgaacattgaaagatagaaaaaatacttatatattatttcgagtttactagtatcattaaact |
5951497 |
T |
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| Q |
225 |
ttaaaccaagttcttaatttaccgatgtcactttcttgtatatttgcgctgggttagtacactcactatatggatagtctgatgtcataatttccaaaac |
324 |
Q |
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| T |
5951498 |
ttaaaccaagttcttaatttaccgatgtcactttcttgtatatttgtgccgggttagtacactcactatatggatagtctgatgtcataatttccaaaac |
5951597 |
T |
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| Q |
325 |
acacatgccaaatgagtaaacatcaacaagttcattgt |
362 |
Q |
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| T |
5951598 |
acacatgccaaatgagtacacatcaacaagttcattgt |
5951635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 240 - 362
Target Start/End: Original strand, 31951650 - 31951772
Alignment:
| Q |
240 |
aatttaccgatgtcactttcttgtatatttgcgctgggttagtacactcactatatggatagtctgatgtcataatttccaaaacacacatgccaaatga |
339 |
Q |
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| T |
31951650 |
aatttaccgatgtcactttcttgtatatctgtgctggattagtacattcactatatggataatcagatgtgagcatttccaatacacacatgccaaatga |
31951749 |
T |
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| Q |
340 |
gtaaacatcaacaagttcattgt |
362 |
Q |
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| T |
31951750 |
gtaaacatcagcaagttcattgt |
31951772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 28188708 - 28188602
Alignment:
| Q |
256 |
tttcttgtatatttgcgctgggttagtacactcactatatggatagtctgatgtcataatttccaaaacacacatgccaaatgagtaaacatcaacaagt |
355 |
Q |
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| T |
28188708 |
tttcttgtatatctacgccgtgttagcacactcactataaggacaataatatgtaataatttccaaagcacacatgccaaatgagtacacatcaacaagt |
28188609 |
T |
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| Q |
356 |
tcattgt |
362 |
Q |
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||||||| |
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| T |
28188608 |
tcattgt |
28188602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 28153921 - 28153837
Alignment:
| Q |
90 |
actaggcattttccaataaactcgcgtgcttctgcatcttcaattcggaaaagtgttgctggtagcttaccctgaacattgaaag |
174 |
Q |
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| T |
28153921 |
actaggcattttccaataaactccaatgcttttgcatcttcaaatcagaaaagtgttgctggtagcataccttgaacattaaaag |
28153837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 28507736 - 28507834
Alignment:
| Q |
225 |
ttaaaccaagttcttaatttaccgatgtcactttcttgtatatttgcgctgggttagtacactcactatatggatagtctgatgtcataatttccaaaa |
323 |
Q |
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| T |
28507736 |
ttaaaccaaattcgtaattaaacgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagatgtaatcatttccaaaa |
28507834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 22396537 - 22396679
Alignment:
| Q |
32 |
agacacaagaaatggatcatgcaacagttcttttgctgatggtctccttgctgcatttactaggcattttccaataaactcgcgtgcttctgcatcttca |
131 |
Q |
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| T |
22396537 |
agacacaagaaatggatcatgcagcagttattttgccaaaggtttttttactgctttcactaggcatttttcaataaactctcgtacttcggcatcttct |
22396636 |
T |
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| Q |
132 |
attcggaaaagtgttgctggtagcttaccctgaacattgaaag |
174 |
Q |
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| T |
22396637 |
atcaggataagtgcttctggtagcttacactgaacattaaaag |
22396679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 22396747 - 22396811
Alignment:
| Q |
228 |
aaccaagttcttaatttaccgatgtcactttcttgtatatttgcgctgggttagtacactcacta |
292 |
Q |
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| T |
22396747 |
aaccaagatctgaatttaccgatgtcactttcttgaataacagagctgggtcagtacactcacta |
22396811 |
T |
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