View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17128_high_1 (Length: 351)
Name: NF17128_high_1
Description: NF17128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17128_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 334
Target Start/End: Original strand, 33451311 - 33451525
Alignment:
| Q |
121 |
caaatagagccttaggatgtacaaatatcattgttgctcata--gtgtgtatatgaaagtcatattttagcttcnnnnnnnnnncttcatttaggaacaa |
218 |
Q |
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| T |
33451311 |
caaacagagccttagggtgtacaaatatcattgttgctcatatagtgtgcatatgaaagccatattttagctactttttttct-cttcatttaggaacaa |
33451409 |
T |
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| Q |
219 |
attatttcttttgagaaaatttgggaacatattgttatcataacttaatttatatgtacaaatagcgttaaattattttgcacatgcattcaatcaaatc |
318 |
Q |
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| T |
33451410 |
attatttcttttgagaaaatttgggaacatattgttatcataacttaatttatatgtaccgatagtgttaaattattttgcacatgcatccaatcaaatc |
33451509 |
T |
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| Q |
319 |
atgtcacataaatatt |
334 |
Q |
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| T |
33451510 |
atgtcacataaatatt |
33451525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 33451210 - 33451247
Alignment:
| Q |
20 |
ttacatcataaaatttccaaacgatggaatggaatatc |
57 |
Q |
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| T |
33451210 |
ttacatcataaaatttccaaacggtggaatggaatatc |
33451247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 2533938 - 2533996
Alignment:
| Q |
271 |
tatgtacaaatagcgttaaattattttgcacatgcattcaatcaaatcatgtcacataa |
329 |
Q |
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| T |
2533938 |
tatgtacatatatcgtaaatttattttacacatgcattcaattaaatcatgtcatataa |
2533996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 33050288 - 33050325
Alignment:
| Q |
293 |
attttgcacatgcattcaatcaaatcatgtcacataaa |
330 |
Q |
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| T |
33050288 |
attttacacatgcatccaatcaaatcatgtcacataaa |
33050325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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