View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17128_high_5 (Length: 225)
Name: NF17128_high_5
Description: NF17128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17128_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 9756071 - 9756226
Alignment:
| Q |
10 |
gctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccaccatctgttgatgctccttcatcaccccctt |
109 |
Q |
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| T |
9756071 |
gctccttcgacaccacaagttgtgattgatcctacaacactaccaccttcaacaactcattccacaccaccatctgttgatgctccttcatcaccccctt |
9756170 |
T |
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| Q |
110 |
cgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacg |
165 |
Q |
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| T |
9756171 |
ctacaccaccaactacggtagctccttcgacaccaccatctttggttgatcctacg |
9756226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 9756191 - 9756346
Alignment:
| Q |
10 |
gctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccaccatctgttgatgctccttcatcaccccctt |
109 |
Q |
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| T |
9756191 |
gctccttcgacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttcaacaccaccacccgttcatgatccttcaacaccccctt |
9756290 |
T |
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| Q |
110 |
cgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacg |
165 |
Q |
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| T |
9756291 |
ccacaccaccaattgcggtagctccttcgacaccaccatccgtggttaatcctacg |
9756346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 9755840 - 9755910
Alignment:
| Q |
10 |
gctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccacc |
80 |
Q |
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| T |
9755840 |
gctccttcgacatcaccagttgcggttgatccaacgacactaccaccttcaacacctccatccacaccacc |
9755910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 9755778 - 9755857
Alignment:
| Q |
68 |
cttccacaccaccatctgttgatgctccttcatcacccccttcgacaccaccaactacggtagctccttccacaccacca |
147 |
Q |
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| T |
9755778 |
cttccacaccaccacctgtggtcgctccttcaacacccccttccacaccaccaattacggtagctccttcgacatcacca |
9755857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 9781318 - 9781414
Alignment:
| Q |
66 |
tccttccacaccaccatctgttgatgctccttcatcacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcct |
162 |
Q |
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| T |
9781318 |
tccttccctaccaccacccgttcatgctccttcaacacccccttccacaccaccaattatggtatctccttcgacacaaccacctgtggttgatcct |
9781414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 9756311 - 9756382
Alignment:
| Q |
10 |
gctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccacca |
81 |
Q |
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| T |
9756311 |
gctccttcgacaccaccatccgtggttaatcctacgataccaccaccttcaacacctcctaccacaccacca |
9756382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 9781383 - 9781453
Alignment:
| Q |
11 |
ctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccacca |
81 |
Q |
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| T |
9781383 |
ctccttcgacacaaccacctgtggttgatcctttcacaccaccaccttcgacacctccttccacaccacca |
9781453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 9783155 - 9783224
Alignment:
| Q |
93 |
tccttcatcacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcct |
162 |
Q |
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| T |
9783155 |
tccttcaacacctccttccacaccaccaattatggtagctccttcaacaccaccacccgtggttgatcct |
9783224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 9783325 - 9783386
Alignment:
| Q |
101 |
cacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcct |
162 |
Q |
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| T |
9783325 |
cacctccttccaccccaccaactatggttgctccttcgacaccaccacctgtggttgatcct |
9783386 |
T |
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