View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17128_low_6 (Length: 201)
Name: NF17128_low_6
Description: NF17128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17128_low_6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 34127357 - 34127558
Alignment:
| Q |
1 |
atggagagttttggtctgtgttcttgctcttgaacaaatgctaagtccaactctcccatggttgctctgctgctagaaggtgtaagctgatgtatgttga |
100 |
Q |
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| T |
34127357 |
atggatagttttggtctgtgttcttgctcttgaacaaatgctaagtccaattctcccatggttgctctgctgctagaaggtgtaagctgatgtatgttga |
34127456 |
T |
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| Q |
101 |
aggtggtttcttgtgtttcccttattcaattcaaaatt-gtccttactattattagtccttcctttattattaaattgtgtaaacagaagaacatgtggc |
199 |
Q |
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| T |
34127457 |
aggtggtttcttgtgtttcccttattcaattcaaaattggtccttactattactagtccttcctttattattaaattttgtaaacagaagaacatgtggc |
34127556 |
T |
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| Q |
200 |
ac |
201 |
Q |
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|| |
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| T |
34127557 |
ac |
34127558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34133630 - 34133693
Alignment:
| Q |
1 |
atggagagttttggtctgtgttcttgctcttgaacaaatgctaagtccaactctcccatggttg |
64 |
Q |
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| T |
34133630 |
atggagagttttggtctgtgttcttgctcttgaacaaaagcagggtccacttctcccatggttg |
34133693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 34137544 - 34137578
Alignment:
| Q |
4 |
gagagttttggtctgtgttcttgctcttgaacaaa |
38 |
Q |
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| T |
34137544 |
gagagttttggtctgtgttcttgctcttgaacaaa |
34137578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 34141206 - 34141238
Alignment:
| Q |
3 |
ggagagttttggtctgtgttcttgctcttgaac |
35 |
Q |
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| T |
34141206 |
ggagagttttggtctgtgttctagctcttgaac |
34141238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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