View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17129_low_2 (Length: 310)
Name: NF17129_low_2
Description: NF17129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17129_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 5284304 - 5284599
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5284304 |
aagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaagtcaaagattactcacttaat |
5284403 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284404 |
cgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
5284503 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284504 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
5284599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 5289823 - 5289528
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289823 |
aagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
5289724 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
5289723 |
cgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaa |
5289624 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
304 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289623 |
caagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
5289528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 5310393 - 5310688
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310393 |
aagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
5310492 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
5310493 |
cgtttgcaccacaagtggtgtagacatgcctggagctgattatcaactcacaaaactcttgggccttcgtccatatgtgaaaaggtatatgatgtaccaa |
5310592 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
304 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310593 |
caagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
5310688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 5302492 - 5302780
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302492 |
aagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
5302591 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302592 |
cgtttgcaccacaagtggtgtagacatgcccgaagctgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
5302691 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttc |
297 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5302692 |
caagggtgttttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtgctcgtgtgttggttgtatgttc |
5302780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 5315107 - 5315402
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315107 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
5315206 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5315207 |
cgtttgcaccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaa |
5315306 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
304 |
Q |
| |
|
|||||||| ||||||||||| ||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315307 |
caagggtgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
5315402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 46707114 - 46706814
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46707114 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattacccacttaat |
46707015 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46707014 |
cgtttgcactactagtggtgtagacatgcctggagctgattaccaactcacaaaactcttcggtcttcgcccatatgtgaaaaggtatatgatgtaccaa |
46706915 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtctctg |
308 |
Q |
| |
|
||||| || |||||||| || |||| ||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |
|
|
| T |
46706914 |
caaggttgctttgcaggaggcacggggcttcgtttggctaacgatttggctgagaacaacaaaggtgcccgtgtattggttgtttgttctgaagtcactg |
46706815 |
T |
|
| Q |
309 |
c |
309 |
Q |
| |
|
| |
|
|
| T |
46706814 |
c |
46706814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 1492164 - 1492464
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1492164 |
aagacatggtggtggtagaagtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
1492263 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
1492264 |
cgtttgcaccacaagcggtgtagacatgcctggggccgattatcaactcactaaactcttaggtcttcgtccatatgtaaaaagatacatgatgtaccag |
1492363 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtctctg |
308 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
1492364 |
caaggttgttttgcaggtggcacggtacttcgtttggctaaggatttggctgagaacaacaaaggtgctcgtgtgttagttgtttgttctgaagtcactg |
1492463 |
T |
|
| Q |
309 |
c |
309 |
Q |
| |
|
| |
|
|
| T |
1492464 |
c |
1492464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 1504973 - 1505273
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1504973 |
aagacatggtggtggtagaggtacctagactaggaaaggaggctgccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaat |
1505072 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1505073 |
tgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccag |
1505172 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtctctg |
308 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||| || || |||||||||||||||||||| |||||||||||||| ||||| |||||| ||| |
|
|
| T |
1505173 |
caaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaacaaaggtgcccgtgtgttggttgtctgttccgaagtcactg |
1505272 |
T |
|
| Q |
309 |
c |
309 |
Q |
| |
|
| |
|
|
| T |
1505273 |
c |
1505273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 1477997 - 1478289
Alignment:
| Q |
11 |
gacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcg |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||| |
|
|
| T |
1477997 |
gacatggtggtggtagaagtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggccaaccaaaatcaaagattacacacttgatct |
1478096 |
T |
|
| Q |
111 |
tttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaaca |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
1478097 |
tttgcaccacaagtggtgtagacatgcctggcgctgattaccaactcaccaaactcttaggtcttcgtccatatgtgaagaggtatatgatgtaccaaca |
1478196 |
T |
|
| Q |
211 |
agggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagt |
303 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1478197 |
aggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaataaaggtgctcgtgtgttggttgtttgttctgaagt |
1478289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 1482189 - 1482483
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
1482189 |
aagacatggtggtggtagaggtgcctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaaatcaaagattacacacttaat |
1482288 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
1482289 |
attttgtaccacaagtggtgtagacatgcctggtgccgattaccaactcacaaaactcttaggtcttcgtccatatgtgaagagatacatgatgtaccaa |
1482388 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagt |
303 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||||||||| || || |||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482389 |
caaggatgctttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaataataaaggtgctcgtgtgttggttgtttgttctgaagt |
1482483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 1499236 - 1499528
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
1499236 |
aagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatattacacatttaat |
1499335 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || ||||| ||||| || |||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1499336 |
tttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacatgatgtaccaa |
1499435 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaa |
301 |
Q |
| |
|
| |||||||| ||||||||| || |||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499436 |
ctagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttctgaa |
1499528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 1509120 - 1509415
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||| || |||| ||||||||||||||||||||||||||| || ||||| ||||||||||| || ||||| |
|
|
| T |
1509120 |
aagacatggtggttgtaaaggtacctaggctaggaaaagaggttgcagtgaaggctataaaagaatggggccagccaaaatcaaagattacacatttaat |
1509219 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
| |||||||||||||||| || || ||| ||||||| |||||||||| |||||||| || ||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1509220 |
cttttgcaccacaagtggtgttgatatgtctggagctcattatcaacttaccaaacttttaggtcttcacccatatgtaaaaaggtacatgatgtaccaa |
1509319 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
304 |
Q |
| |
|
||| |||||||||||||||| || || |||| |||||| || ||||| ||||| || ||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
1509320 |
caaaggtgttttgcaggtggcactgtgcttcatttggcaaaggatttggctgaaaataaccaagatgctcgtgtgttggttgtttgttctaaagtc |
1509415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 1486666 - 1486961
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||| || |||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
1486666 |
aagacatggtggtgcgagacgtgcctaggctaggaaatgaggctgcagtgaaagctataaaagaatagggccaaccaaagtcaaagattacacacttaat |
1486765 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
||||||||| ||||| ||| ||||||||| |||||||| |||||||| |||||||| |||||| |||| |||||||| |||| ||||| |||||| |
|
|
| T |
1486766 |
attttgcaccatgagtggtataggcatgcctggtgccgattaccaactcacaaaactcttaggtctttgcccggatgtgaaacggtatatgatataccaa |
1486865 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtc |
304 |
Q |
| |
|
||||| || |||||||| || || || || |||| |||||| || || ||||||||||| |||| ||||| ||||||||| | |||||||||||| |
|
|
| T |
1486866 |
caaggatgctttgcagggggcactgttctacgttaggccaaggacttggctgagaacaataaagatgctcttgtgttggtaatatgttctgaagtc |
1486961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 44128570 - 44128870
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44128570 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgat |
44128669 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44128670 |
cgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaa |
44128769 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtctctg |
308 |
Q |
| |
|
||||| || |||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
44128770 |
caaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactg |
44128869 |
T |
|
| Q |
309 |
c |
309 |
Q |
| |
|
| |
|
|
| T |
44128870 |
c |
44128870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 44132775 - 44133075
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44132775 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgat |
44132874 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44132875 |
cgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaa |
44132974 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtctctg |
308 |
Q |
| |
|
||||| || |||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
44132975 |
caaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactg |
44133074 |
T |
|
| Q |
309 |
c |
309 |
Q |
| |
|
| |
|
|
| T |
44133075 |
c |
44133075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 44141197 - 44141497
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44141197 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgat |
44141296 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44141297 |
cgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaa |
44141396 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagtctctg |
308 |
Q |
| |
|
||||| || |||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
44141397 |
caaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttctgaagtcactg |
44141496 |
T |
|
| Q |
309 |
c |
309 |
Q |
| |
|
| |
|
|
| T |
44141497 |
c |
44141497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 24163916 - 24163622
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
24163916 |
aagacatggtggtagtagaggcaccaagactaggaaaggaggcagccgtgaaggctataaaagaatggggccaaccaaagtcaaagatcacacacttaat |
24163817 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
||||||| | |||||| ||||| |||||||| |||||||| |||||||| |||||||| ||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
24163816 |
attttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtcttcgcccatgtgtaaaaaggtatatgatgtaccaa |
24163717 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttctgaagt |
303 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24163716 |
caagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggttctcgtgtgttggttgtttgttctgaagt |
24163622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 37859490 - 37859202
Alignment:
| Q |
9 |
aagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaat |
108 |
Q |
| |
|
||||||||||||| || |||||||| |||||||| || ||||| ||| ||||| || || |||||||||||||| ||||| |||||||| ||| | || |
|
|
| T |
37859490 |
aagacatggtggttgtggaggtaccaagactaggaaaagaggcagcaacaaaggccatcaaggaatggggtcaacctaagtccaagattacccacctcat |
37859391 |
T |
|
| Q |
109 |
cgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaa |
208 |
Q |
| |
|
| |||||||||| ||||| || |||||||| || ||||| ||||| || || || |||||||| ||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
37859390 |
cttttgcaccaccagtggcgtggacatgcccggtgccgactatcagctgacaaagctcttgggccttcgtccatatgtgaagcgttacatgatgtaccaa |
37859291 |
T |
|
| Q |
209 |
caagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttc |
297 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
37859290 |
caaggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaacaacaaaggtgctcgtgtgttggtagtttgttc |
37859202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 297
Target Start/End: Complemental strand, 37863487 - 37863228
Alignment:
| Q |
38 |
ctagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggagtagacatgc |
137 |
Q |
| |
|
||||| || ||||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||| |||||||||||||||| || || |||| |
|
|
| T |
37863487 |
ctaggaaaagaggctgcaacaaaggctatcaaggaatggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgc |
37863388 |
T |
|
| Q |
138 |
ctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggtacggtact |
237 |
Q |
| |
|
|||| || || ||||| ||||| || ||||||||||||||||| |||||||| | || |||||||| |||||||| |||||||| ||||| ||||| || |
|
|
| T |
37863387 |
ctggtgctgactatcagctcacaaagctcttgggtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgct |
37863288 |
T |
|
| Q |
238 |
tcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttc |
297 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
37863287 |
tcgtttggctaaagatttggctgaaaacaacaaaggcgctcgtgttttggtggtttgttc |
37863228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 286
Target Start/End: Original strand, 39030117 - 39030344
Alignment:
| Q |
59 |
aaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggagtagacatgcctggagccgattatcaactca |
158 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| | ||||||| | || ||||||| ||||||| || || ||||||||||| || ||||| |||| |
|
|
| T |
39030117 |
aaggctatcaatgaatggggtcaacctaagtcaatggttactcatctcatattttgcacttcaagtggtgtcgatatgcctggagctgactatcagctca |
39030216 |
T |
|
| Q |
159 |
ccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagc |
258 |
Q |
| |
|
| || ||||| || ||| | |||||||| || | || ||||||||||||||||| |||||||| |||| | || ||||| ||||| |||||||| || |
|
|
| T |
39030217 |
caaagctcttaggcctttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagatttggc |
39030316 |
T |
|
| Q |
259 |
tgagaacaacaaaggtgctcgtgtgttg |
286 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
39030317 |
tgagaacaacaaaggtgcccgtgtgttg |
39030344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 71 - 282
Target Start/End: Original strand, 35250869 - 35251080
Alignment:
| Q |
71 |
gaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggagtagacatgcctggagccgattatcaactcaccaaactcttgg |
170 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| | || |||||| || ||||| || || |||||||| || |||||||| ||||| ||| | | | |
|
|
| T |
35250869 |
gaatggggtcaaccaaagtccaagatcactcacctcatattttgcattactagtggtgtggatatgcctggtgctgattatcagctcacaaaattgctag |
35250968 |
T |
|
| Q |
171 |
gtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaa |
270 |
Q |
| |
|
| ||||| || | |||||| | || ||||||||||||||||||||||| || ||||||| ||| ||||||||||| |||||||| ||||||||||| || |
|
|
| T |
35250969 |
gacttcgtccgtcggtgaaacgttatatgatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggctaaagatttggctgagaacaataa |
35251068 |
T |
|
| Q |
271 |
aggtgctcgtgt |
282 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35251069 |
aggtgctcgtgt |
35251080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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