View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17129_low_4 (Length: 228)
Name: NF17129_low_4
Description: NF17129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17129_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 1842005 - 1841942
Alignment:
| Q |
135 |
gaaaagttagctacataatattcaat-cttatgattatcaaatttattatttgaacttctttct |
197 |
Q |
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| T |
1842005 |
gaaaagttagttaaataatattcaattcttattattatcaaatttattatttgaacttctttct |
1841942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 1866606 - 1866545
Alignment:
| Q |
149 |
ataatattcaat-cttatgattatcaaatttattatttgaacttctttctaggtgtggaaag |
209 |
Q |
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| T |
1866606 |
ataatattcaatgcttatgattatcaagtttaatagttgaacttctttctaggtgtggaaag |
1866545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 1851424 - 1851347
Alignment:
| Q |
133 |
ccgaaaagttagctacataatattcaatc-ttatgattatcaaatttattatttgaacttctttctaggtgtggaaag |
209 |
Q |
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| T |
1851424 |
ccgaaaagttagtttaataatattcaattgttatgattgtcaagtttaatatttgaacttctttctatgtgtggaaag |
1851347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 4227233 - 4227201
Alignment:
| Q |
72 |
ccctttactatcatgaaaggataaaaaagtaat |
104 |
Q |
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| T |
4227233 |
ccctttactatcatgaaaggttaaaaaagtaat |
4227201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 15429206 - 15429162
Alignment:
| Q |
160 |
tcttatgattatcaaatttattatttgaacttctttctaggtgtg |
204 |
Q |
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| T |
15429206 |
tcttatgattatcaattttattatttgaactcctctctaagtgtg |
15429162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 15435820 - 15435776
Alignment:
| Q |
160 |
tcttatgattatcaaatttattatttgaacttctttctaggtgtg |
204 |
Q |
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||||||||||||||| ||||||||||||||| || |||| ||||| |
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| T |
15435820 |
tcttatgattatcaattttattatttgaactcctctctaagtgtg |
15435776 |
T |
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