View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_high_10 (Length: 453)
Name: NF1712_high_10
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 85 - 260
Target Start/End: Original strand, 8176807 - 8176983
Alignment:
| Q |
85 |
agattactcaacaactcataagtgtgaagacaaactcgctagaattgaaaagaaaatcaaatgatctctctcatttataaagaggtgcaatttattttaa |
184 |
Q |
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| T |
8176807 |
agattactcaacaactcataagtgtgaagacaaactcgctagaattgaaaagaaaatcgaatgatctctctcatttataaagaggtgcaatttattttaa |
8176906 |
T |
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| Q |
185 |
aacttaaaactgatattcctataacaccaaatacaact-aaatactaactaaacaacagagggaatttcatctgtcc |
260 |
Q |
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| T |
8176907 |
aacttaaaactgatattcctataacaccaaatacaactaaaatactaactaaacaacagagggaatttcatctgtcc |
8176983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 312 - 446
Target Start/End: Original strand, 8177035 - 8177169
Alignment:
| Q |
312 |
cctttctgagcataccctctttatggaaccctaccttttccaacaccctttgagaagctatgttctgtagaacagtataagcttgcaaccttctcaaatc |
411 |
Q |
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| T |
8177035 |
cctttctgagcataccctctttatggaaccctaccttttccaacaccctctgagaagctatgttctgtagaacagtataagcttgcaaccttctcaaatc |
8177134 |
T |
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| Q |
412 |
tgggaactcatggaacacttttgacagaataatct |
446 |
Q |
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| T |
8177135 |
tgggaactcatggaacacttttgacagaagaatct |
8177169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 8176634 - 8176701
Alignment:
| Q |
17 |
attttcaccacttttcgcacactttccttcctcattttattaacttgagcgtcttagtgctaactcta |
84 |
Q |
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| T |
8176634 |
attttcaccacttttcgcacactttccttcctcatttcattaacttgagcatcttaatgctaactcta |
8176701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 45046503 - 45046467
Alignment:
| Q |
17 |
attttcaccacttttcgcacactttccttcctcattt |
53 |
Q |
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| T |
45046503 |
attttcatcacttttcgcacattttccttcctcattt |
45046467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 25503279 - 25503336
Alignment:
| Q |
313 |
ctttctgagcataccctctttatggaaccctaccttttccaacaccctttgagaagct |
370 |
Q |
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| T |
25503279 |
ctttctgagtataccctccctaaggaacccaaccttttccaagaccctctgagaagct |
25503336 |
T |
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