View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_high_12 (Length: 426)
Name: NF1712_high_12
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_high_12 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Complemental strand, 34112517 - 34112118
Alignment:
| Q |
15 |
gtaatgaccaaccttggtgaaaagcttactgatgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagt |
114 |
Q |
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| T |
34112517 |
gtaatgaccaaccttggtgaaaagcttactgatgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagt |
34112418 |
T |
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| Q |
115 |
ttgttaaggttatgatggccaagtgagattaattatcaaaccatacaatactactactacaccttatataatgtataacctttaatcaattctcattcat |
214 |
Q |
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| T |
34112417 |
ttgttaaggttatgatggccaagtgagattaattatcaaaccatacaatactactactacaccttatataatgtataacctttaatcaattctcattcat |
34112318 |
T |
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| Q |
215 |
ttgttcaacattgatcattgtaatgaaatatgatatatgtgctagatgtgaagttgatatacgggggatattatataaataaaatttgtcatgttcacac |
314 |
Q |
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| T |
34112317 |
ttgttcaacattgatcattgtaatgaaatatgatatatgtgctagatgtgaagttgatatacgggggatattatataaataaaacttgtcatgttcacac |
34112218 |
T |
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| Q |
315 |
aattaatttgtgtttcagctaaggtcagattgttctaataatattcaagttatatctgtttttattagactttacttgctttaccttcactaacaagtat |
414 |
Q |
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| T |
34112217 |
aattaatttgtgtttcagctaaggtcagattgttctaataatattcaagttgtatctgtttttattagactttacttactttaccttcactaacaagtat |
34112118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 38317290 - 38317185
Alignment:
| Q |
36 |
aagcttactgatgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagtttgttaaggttatgatggcca |
135 |
Q |
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| T |
38317290 |
aagctgactgatgaagaagttgacgagatgattcgcgaggctgatgttgatggtgatggtcagatcaactatgaggagtttgtcaaagtcatgatggcta |
38317191 |
T |
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| Q |
136 |
agtgag |
141 |
Q |
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|||||| |
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| T |
38317190 |
agtgag |
38317185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 8921223 - 8921108
Alignment:
| Q |
18 |
atgaccaaccttggtgaaaagcttactgatgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagtttg |
117 |
Q |
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| T |
8921223 |
atgaccaaccttggcgagaagctcaccgatgaagaagtcgatgagatgatccgtgaggctgatgttgatggtgatggtcaaataaactacgaggaattcg |
8921124 |
T |
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| Q |
118 |
ttaaggttatgatggc |
133 |
Q |
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| T |
8921123 |
ttaaggtcatgatggc |
8921108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 35748 - 35625
Alignment:
| Q |
18 |
atgaccaaccttggtgaaaagcttactgatgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagtttg |
117 |
Q |
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||||| || |||||||| ||| | || || |||||||||||||| |||||||| || || ||||||||||||||||| || || || || || ||||||| |
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| T |
35748 |
atgacaaatcttggtgagaagttgacagacgaagaagttgatgagatgattcgtgaagccgatgttgatggtgatgggcagatcaactacgaggagtttg |
35649 |
T |
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| Q |
118 |
ttaaggttatgatggccaagtgag |
141 |
Q |
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| T |
35648 |
tcaaagttatgatggccaagtgag |
35625 |
T |
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