View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_high_14 (Length: 396)
Name: NF1712_high_14
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 17285882 - 17286258
Alignment:
| Q |
15 |
gacaacgggacaatgcctttaaacaacaattggagaagataaactagtacacatttcaaaggatgaaataagatatcttatatattctcgaaaaatttaa |
114 |
Q |
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| T |
17285882 |
gacaacgggacaatgcctttaaaca---attggagaagataaactagtacccatttcaaaggatgaaataagatatcttatatattctcgaaaaatttaa |
17285978 |
T |
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| Q |
115 |
tagctaatatttcaataagagtttaaatatctttatgcaatacggtcagtaaatt-nnnnnnnnngtttatacggttaataaatccacaactactttcct |
213 |
Q |
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| T |
17285979 |
tagctaatatttcaataagagtttaaatatctttatccaatacggtcagtaaattaaaaaaaaaagtttatacggttaaaaaatccacaactactttcct |
17286078 |
T |
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| Q |
214 |
taaaacaaaaattactactaataatatggataattttaaaaagggtttgtctaac----------atgacataattatgattgatagtcaatgaaggtta |
303 |
Q |
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| T |
17286079 |
taaaacaaaaattacaactaataatatggataattttaaaaagggtttgtctaacatgaattatgatgacataattatgattgatagtaaatgaaggtta |
17286178 |
T |
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| Q |
304 |
atatagatagtcatgagttggatcaaggttatgagttcaactttcatgtgaaaaattctttattagatgatttattagtg |
383 |
Q |
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| T |
17286179 |
atatagatagtcatgagttggatcaaggttatgagttcaactttcatgtgaaaaattctttattagatgatttattagtg |
17286258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 17283302 - 17283450
Alignment:
| Q |
15 |
gacaacgggacaatgcctttaaacaacaattggagaagataaactagtacacatttcaaaggatgaaataagatatcttatatattctcgaaaaatttaa |
114 |
Q |
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| T |
17283302 |
gacaacgggacaatgcctttaaaca---attggagaagataaatgactacccatttcaaaggatgaaataaggtatcttatatattctcgaaaaatttaa |
17283398 |
T |
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| Q |
115 |
tagctaatatttcaataagagtttaaatatctttatgcaatacggtcagtaa |
166 |
Q |
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| T |
17283399 |
tagctaatattttaataagagtttaaatatctttatacaatacggtcagtaa |
17283450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 17284699 - 17284735
Alignment:
| Q |
272 |
acataattatgattgatagtcaatgaaggttaatata |
308 |
Q |
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| T |
17284699 |
acataattatgattgatagtcaatgaaggttaatata |
17284735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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