View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_high_21 (Length: 324)
Name: NF1712_high_21
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 23955661 - 23955969
Alignment:
| Q |
1 |
gctacaataggttatgctatgttttaattggttttaggtattgattaattaatttgtagacattaatgaaatgttttatttttagaacatgattattatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23955661 |
gctacaataggttatgctatgttttaattggttttaggtactgattaattaatttgtagacattaatgaaatgttttatttttagaacatgattattatt |
23955760 |
T |
|
| Q |
101 |
gaaattcttttggtgaaagaatacaaagtcttagttttgtacaaattatggag---aaaaactatagcattgtgtatgacatttaatacataactagtta |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23955761 |
gaaattcttttggtgaaagaatacaaagtcttagttttgtacaaattatggagagaaaaaactatagcattgtgtatgacatttaatacataactagtta |
23955860 |
T |
|
| Q |
198 |
gtgttctgttattcttttgtaataatctttcttacaacaatgcttctttatggcatctaattgactatgccatcnnnnnnnattctattcataaaacaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
23955861 |
gtgttctgttattcttttgtaataatctttcttacaacaatgcttctttatggcatctaattgactatgccatctttttttattctattcataaaacgat |
23955960 |
T |
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| Q |
298 |
tgctttaga |
306 |
Q |
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||||||||| |
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| T |
23955961 |
tgctttaga |
23955969 |
T |
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