View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1712_high_26 (Length: 280)

Name: NF1712_high_26
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1712_high_26
NF1712_high_26
[»] chr1 (9 HSPs)
chr1 (101-255)||(34771183-34771337)
chr1 (137-269)||(3167446-3167576)
chr1 (120-269)||(4941757-4941905)
chr1 (119-260)||(46150021-46150159)
chr1 (198-255)||(13269271-13269328)
chr1 (171-251)||(21485864-21485943)
chr1 (18-64)||(34771100-34771146)
chr1 (171-269)||(40778037-40778134)
chr1 (176-242)||(8221647-8221713)
[»] chr8 (8 HSPs)
chr8 (119-260)||(1214336-1214476)
chr8 (186-260)||(28430003-28430077)
chr8 (120-255)||(17856878-17857009)
chr8 (137-260)||(42573143-42573264)
chr8 (198-260)||(25382264-25382326)
chr8 (192-255)||(13241121-13241184)
chr8 (194-260)||(17844900-17844966)
chr8 (176-253)||(5725798-5725877)
[»] chr4 (8 HSPs)
chr4 (139-268)||(25505313-25505440)
chr4 (121-269)||(9363168-9363313)
chr4 (171-269)||(30563683-30563779)
chr4 (198-262)||(36193318-36193382)
chr4 (192-269)||(27572597-27572674)
chr4 (198-269)||(22851215-22851286)
chr4 (24-65)||(3257600-3257641)
chr4 (209-269)||(12885664-12885724)
[»] chr2 (10 HSPs)
chr2 (119-247)||(20506696-20506821)
chr2 (123-255)||(36076458-36076589)
chr2 (123-262)||(37605810-37605948)
chr2 (123-255)||(13536971-13537099)
chr2 (193-247)||(36520881-36520935)
chr2 (132-260)||(11033040-11033167)
chr2 (208-269)||(8267463-8267524)
chr2 (120-220)||(21136249-21136347)
chr2 (173-260)||(39303510-39303598)
chr2 (120-223)||(42074785-42074887)
[»] chr7 (5 HSPs)
chr7 (182-260)||(7738777-7738855)
chr7 (127-253)||(19127015-19127138)
chr7 (121-247)||(24504296-24504419)
chr7 (174-245)||(35759103-35759174)
chr7 (132-253)||(2746633-2746751)
[»] chr5 (3 HSPs)
chr5 (173-260)||(37941206-37941291)
chr5 (170-269)||(28440843-28440940)
chr5 (137-255)||(41732188-41732305)
[»] chr6 (4 HSPs)
chr6 (132-269)||(24209143-24209278)
chr6 (184-269)||(33106034-33106119)
chr6 (184-269)||(24585220-24585306)
chr6 (184-260)||(3860904-3860979)
[»] chr3 (5 HSPs)
chr3 (187-260)||(29019938-29020011)
chr3 (184-260)||(26536473-26536549)
chr3 (196-260)||(26104444-26104508)
chr3 (132-253)||(52032746-52032868)
chr3 (206-262)||(53461648-53461704)
[»] scaffold0443 (1 HSPs)
scaffold0443 (120-243)||(7412-7533)
[»] scaffold0069 (1 HSPs)
scaffold0069 (184-260)||(2300-2375)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 101 - 255
Target Start/End: Original strand, 34771183 - 34771337
Alignment:
Q  101 cccatccctaatcggacgtcagggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataat 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34771183 cccatcccaaatcggacgtcagggccgacctaacaaattaagaggcctaaagcaaaaaatttcatgtgaacctttaaaattattatttttataacataat 34771282  T
Q  201 atttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagta 255  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  34771283 atttatataaaaccaattttgtgcataacaaaatttgaattcatgaccaagagta 34771337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 3167576 - 3167446
Alignment:
Q  137 attaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaattt 236  Q
    |||||||||| |||||||||||  || || ||  ||||||||| ||| |||||| ||||| ||||||||||||||| |||||||||| ||||||||||||    
T  3167576 attaagaggcttaaagcaaaaatattaatgtgc-cctttaaaaatat-atttttttaacaaaatatttatataaaatcaattttgtggagaccaaaattt 3167479  T
Q  237 gaattcatgaccaagagtacttgaagctttttt 269  Q
    ||||||||||| ||||||| |||| || |||||    
T  3167478 gaattcatgactaagagtaattgatgccttttt 3167446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 4941905 - 4941757
Alignment:
Q  120 cagggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattt 219  Q
    |||||||| || |||| |||||||||||||||||||||| ||| || ||  | ||||||| |||  |||||  |||| |||| |||||||||| |||||     
T  4941905 cagggccgtcccaacagattaagaggcctaaagcaaaaattttaatgtgg-cttttaaaaatatatttttttcaacagaatagttatataaaatcaattg 4941807  T
Q  220 tgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    |||| |||| ||||||||||||||||||||||| || |||| || |||||    
T  4941806 tgtggagactaaaatttgaattcatgaccaagaataattgatgcattttt 4941757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 260
Target Start/End: Complemental strand, 46150159 - 46150021
Alignment:
Q  119 tcagggccgacctaacaaattaagaggcctaaagcaaaaaatttcat-ttgaacctttaaaattattatttttataacataatatttatataaaaccaat 217  Q
    |||||||||  |||||| |||||||||| |||||||||| | || || |||  ||| ||||| |||| |||||| |||  |||||||||| |||| ||||    
T  46150159 tcagggccggtctaacagattaagaggcataaagcaaaataattaatgttg--cctataaaaatatt-ttttta-aacgaaatatttatagaaaatcaat 46150064  T
Q  218 tttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    |||||| |||||||||||||||||||||||||| |||| ||||    
T  46150063 tttgtggagaccaaaatttgaattcatgaccaaaagtaattga 46150021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 13269271 - 13269328
Alignment:
Q  198 aatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagta 255  Q
    ||||||||||||||| ||||| |||| |||| |||||||||||||||||| |||||||    
T  13269271 aatatttatataaaatcaattgtgtggagacaaaaatttgaattcatgacgaagagta 13269328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 21485864 - 21485943
Alignment:
Q  171 cctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaag 251  Q
    ||||||||| ||| || ||| ||||| ||||||||||||||| ||||||| || ||||||||| |||||||||||| ||||    
T  21485864 cctttaaaaatat-atatttttaacagaatatttatataaaatcaattttatggagaccaaaacttgaattcatgatcaag 21485943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 34771100 - 34771146
Alignment:
Q  18 tgaaaagaactgtttcagttaagctccaaaactgttaataatgattc 64  Q
    ||||||||||||||| || |||||||||||| |||||||||||||||    
T  34771100 tgaaaagaactgtttgagctaagctccaaaattgttaataatgattc 34771146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 40778134 - 40778037
Alignment:
Q  171 cctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    ||||||||| |||| || || ||||| ||||||||||||||  |||||||||  | |||||||||||||||||||| |||| ||| ||||  |||||||    
T  40778134 cctttaaaaatatttttatt-taacaaaatatttatataaagtcaattttgtagataccaaaatttgaattcatgatcaagtgtaattgagactttttt 40778037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 8221647 - 8221713
Alignment:
Q  176 aaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattc 242  Q
    |||| |||| |||||| || | |||||||||| |||| |||||||||  ||||||||||||||||||    
T  8221647 aaaaatattttttttaaaaaaaaatatttatacaaaatcaattttgttaagaccaaaatttgaattc 8221713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 119 - 260
Target Start/End: Complemental strand, 1214476 - 1214336
Alignment:
Q  119 tcagggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaatt 218  Q
    ||||||||| || |||||||||||| |||||||||||||||||| || ||  ||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  1214476 tcagggccggcccaacaaattaagatgcctaaagcaaaaaatttaatgtgg-cctttaaaattattacttttttaacataatatttatataaaatcaatt 1214378  T
Q  219 ttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||    
T  1214377 ttgtggagaccaaaaattgaattcatgaccaagagtaattga 1214336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 28430003 - 28430077
Alignment:
Q  186 tttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    ||||| ||||| ||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||| ||||    
T  28430003 tttttttaacagaatatttatataaaatcaattttgtggagaccaaaatttaaattcattaccaagagtaattga 28430077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 255
Target Start/End: Complemental strand, 17857009 - 17856878
Alignment:
Q  120 cagggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattt 219  Q
    ||||||||||| |||| ||||||||||||||| |||||||||| || ||   |||  |||  | |||||||  || | ||||||||||||||| |||||     
T  17857009 cagggccgacccaacagattaagaggcctaaaacaaaaaatttaatgtgg--cttgtaaa--aatattttttcaagagaatatttatataaaatcaatta 17856914  T
Q  220 tgtgcagaccaaaatttgaattcatgaccaagagta 255  Q
    |||| ||||||||||||||||| |||||||||||||    
T  17856913 tgtgaagaccaaaatttgaatttatgaccaagagta 17856878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 260
Target Start/End: Original strand, 42573143 - 42573264
Alignment:
Q  137 attaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaattt 236  Q
    ||||||||||||||| ||||||| || || ||   |||||||| || ||||||| ||||| ||||||| ||||||| ||||||| |  ||| ||||||||    
T  42573143 attaagaggcctaaaacaaaaaaattaatgtg-gtctttaaaaata-tatttttctaacaaaatatttgtataaaatcaattttatagagatcaaaattt 42573240  T
Q  237 gaattcatgaccaagagtacttga 260  Q
     |||||||||||||||||| ||||    
T  42573241 aaattcatgaccaagagtaattga 42573264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 25382264 - 25382326
Alignment:
Q  198 aatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    ||||||||||||||| |||||||||| |||| ||||||||||||||| | |||||||| ||||    
T  25382264 aatatttatataaaatcaattttgtgaagactaaaatttgaattcattatcaagagtaattga 25382326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 13241121 - 13241184
Alignment:
Q  192 taacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagta 255  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||| ||| ||| | ||||||    
T  13241121 taacagaatatttatataaaatcaattttgtggagaccaaaatttgagttcgtgatctagagta 13241184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 17844900 - 17844966
Alignment:
Q  194 acataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    ||||||||||||||||||| |||||||||  ||| |||||||| | ||||||| |||||||| ||||    
T  17844900 acataatatttatataaaatcaattttgtagagatcaaaatttaatttcatgatcaagagtaattga 17844966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 5725798 - 5725877
Alignment:
Q  176 aaaattattatttttataacataatatttatataaaaccaattttg--tgcagaccaaaatttgaattcatgaccaagag 253  Q
    |||||||||| | || ||||||||||||||||||||| ||||||||  |  |||||||||||||| ||| ||||| ||||    
T  5725798 aaaattattaatattttaacataatatttatataaaatcaattttgtatagagaccaaaatttgatttcgtgacctagag 5725877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 268
Target Start/End: Complemental strand, 25505440 - 25505313
Alignment:
Q  139 taagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttga 238  Q
    ||||||||||||| |||||| ||| || ||| |||||||||  || ||||||| || ||||||||||||||||| |||||||||| ||| ||||||||||    
T  25505440 taagaggcctaaaacaaaaattttaatatga-cctttaaaaacat-atttttaaaaaataatatttatataaaatcaattttgtggagatcaaaatttga 25505343  T
Q  239 attcatgaccaagagtacttgaagcttttt 268  Q
    ||||||||||||||||| ||||||||||||    
T  25505342 attcatgaccaagagtaattgaagcttttt 25505313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 269
Target Start/End: Original strand, 9363168 - 9363313
Alignment:
Q  121 agggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaatttt 220  Q
    |||||||||| |||| |||||||||| |||| |||||| ||| || ||  | ||||||| |||| ||||||  ||| ||||||||||||||| |||||||    
T  9363168 agggccgacccaacagattaagaggcttaaaacaaaaattttaatgtgg-cttttaaaaatatttttttta--acagaatatttatataaaatcaatttt 9363264  T
Q  221 gtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    ||| ||| ||||||||||||||||||||||||||| |||| || |||||    
T  9363265 gtggagatcaaaatttgaattcatgaccaagagtaattgaggccttttt 9363313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 30563779 - 30563683
Alignment:
Q  171 cctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    |||||||||||||||||||||  | | ||||||||||||||| |||||||||| |||||||||| ||||||||||| |||||| | ||||||| |||||    
T  30563779 cctttaaaattattattttta--atagaatatttatataaaatcaattttgtggagaccaaaatctgaattcatgagcaagagaaattgaagccttttt 30563683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 36193318 - 36193382
Alignment:
Q  198 aatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaag 262  Q
    ||||||||||| ||| |||||||||| ||| |||||||||||||||||| |||||||| ||||||    
T  36193318 aatatttatatgaaatcaattttgtggagatcaaaatttgaattcatgatcaagagtaattgaag 36193382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 27572674 - 27572597
Alignment:
Q  192 taacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    ||||||| ||||||||||| | |||||||  | ||||| |||||||||||||||| |||||||| ||||||| |||||    
T  27572674 taacatattatttatataatatcaatttttcggagaccgaaatttgaattcatgaacaagagtaattgaagcattttt 27572597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 22851215 - 22851286
Alignment:
Q  198 aatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    ||||||||||||||   ||||||||  ||||||||||||| | ||||||||||||||| ||||||| |||||    
T  22851215 aatatttatataaagtaaattttgtaaagaccaaaatttggaatcatgaccaagagtaattgaagccttttt 22851286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 3257641 - 3257600
Alignment:
Q  24 gaactgtttcagttaagctccaaaactgttaataatgattca 65  Q
    |||||||||||||| || | ||||||||||||||||||||||    
T  3257641 gaactgtttcagttcagtttcaaaactgttaataatgattca 3257600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 12885724 - 12885664
Alignment:
Q  209 aaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    |||| |||||||||| || ||||||||||||| | |||||||||||| |||| || |||||    
T  12885724 aaaatcaattttgtggagtccaaaatttgaatccttgaccaagagtaattgaggccttttt 12885664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 247
Target Start/End: Complemental strand, 20506821 - 20506696
Alignment:
Q  119 tcagggccgacctaaca-aattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaat 217  Q
    |||||||||||| |||| ||||||||||| ||||||||||| ||| || ||| ||||||||| |||| ||||   |||| ||||||||||||||| ||||    
T  20506821 tcagggccgacccaacagaattaagaggcataaagcaaaaattttaatgtga-cctttaaaaatattttttt---aacagaatatttatataaaatcaat 20506726  T
Q  218 tttgtgcagaccaaaatttgaattcatgac 247  Q
    |||||| |||||||||||||||||||||||    
T  20506725 tttgtggagaccaaaatttgaattcatgac 20506696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 36076589 - 36076458
Alignment:
Q  123 ggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattat-tatttttataacataatatttatataaaaccaattttg 221  Q
    ||||| ||||| | |||| ||||||||||||||||| |||  | ||  ||||||||| ||| ||||||| ||||||||||||||||||||| ||||| ||    
T  36076589 ggccggcctaagagattaggaggcctaaagcaaaaattttattatgg-cctttaaaagtatatattttt-taacataatatttatataaaatcaattgtg 36076492  T
Q  222 tgcagaccaaaatttgaattcatgaccaagagta 255  Q
    || ||| ||||||||||||||| |||||||||||    
T  36076491 tggagatcaaaatttgaattcaagaccaagagta 36076458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 262
Target Start/End: Original strand, 37605810 - 37605948
Alignment:
Q  123 ggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattttgt 222  Q
    |||||||| |||||||||||||| ||||||||||   ||| || ||  |  |||||| |||  ||||| ||||| ||||||||||||||| |||||||||    
T  37605810 ggccgacccaacaaattaagaggtctaaagcaaattttttaatgtgg-cagttaaaaatatattttttttaacagaatatttatataaaatcaattttgt 37605908  T
Q  223 gcagaccaaaatttgaattcatgaccaagagtacttgaag 262  Q
    | |||| ||||||||| |||||||| ||||||| ||||||    
T  37605909 ggagactaaaatttgagttcatgactaagagtaattgaag 37605948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 13537099 - 13536971
Alignment:
Q  123 ggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattttgt 222  Q
    |||||||| |||| |||||||||| |||| |||||||||| || ||  ||||| |||||||| |||| |||    ||||||||||||||| |||||  ||    
T  13537099 ggccgacccaacagattaagaggcttaaatcaaaaaatttaatgtgg-cctttgaaattatttttttaatag---aatatttatataaaagcaattgcgt 13537004  T
Q  223 gcagaccaaaatttgaattcatgaccaagagta 255  Q
    | ||||||||||||||||||||||||| |||||    
T  13537003 ggagaccaaaatttgaattcatgaccatgagta 13536971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 36520881 - 36520935
Alignment:
Q  193 aacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgac 247  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  36520881 aacataatatttatataaaatcaattttgtggagaccaaaatttgaattcatgac 36520935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 11033040 - 11033167
Alignment:
Q  132 aacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataata-tttatataaaaccaattttgtgcagacca 230  Q
    |||||||||||| || ||||||||||| ||| || ||   |||||||| || ||||||| |||| || || ||||||||||| |||||||||| ||||||    
T  11033040 aacaaattaagaagcttaaagcaaaaattttaatgtg-gtctttaaaaata-tatttttttaacctactattttatataaaatcaattttgtggagacca 11033137  T
Q  231 aaatttgaattcatgaccaagagtacttga 260  Q
    |||||||||||||||| |||||||| ||||    
T  11033138 aaatttgaattcatgatcaagagtaattga 11033167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 8267524 - 8267463
Alignment:
Q  208 taaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||| |||| || |||||    
T  8267524 taaaatcaattttgtggagacctaaatttgaattcatgaccaagagtaattgatgcattttt 8267463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 21136249 - 21136347
Alignment:
Q  120 cagggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattt 219  Q
    ||||||||| | |||| |||||||||||||||| |||| |||| || ||  |||||||||||||||||||| ||||| |||||||||| || | ||||||    
T  21136249 cagggccgagcgaacagattaagaggcctaaagaaaaagatttaatgtg-gcctttaaaattattattttt-taacagaatatttataaaatatcaattt 21136346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 39303598 - 39303510
Alignment:
Q  173 tttaaaattattatt-tttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    ||||||||||||||| ||| ||||| || ||| ||| |||| |||||||||| ||| ||||||||||||| |||||| |||||| ||||    
T  39303598 tttaaaattattattatttttaacagaacattcataaaaaatcaattttgtggagatcaaaatttgaattgatgacctagagtaattga 39303510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 42074887 - 42074785
Alignment:
Q  120 cagggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattat-tatttttataacataatatttatataaaaccaatt 218  Q
    |||||||| || |||||||||| ||| |||||| ||||| ||| || ||| | ||||||| ||| ||||||| ||| | ||||||||||||||| |||||    
T  42074887 cagggccgtcccaacaaattaaaaggtctaaagtaaaaattttaatatgatc-tttaaaaatatatattttt-taatacaatatttatataaaatcaatt 42074790  T
Q  219 ttgtg 223  Q
    |||||    
T  42074789 ttgtg 42074785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 7738777 - 7738855
Alignment:
Q  182 attatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    ||||||||| ||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||||    
T  7738777 attatttttttaacaaaatatttatataaaatcaattttgtggaaaccaaaatttgaattcatgaccaagagtaattga 7738855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 253
Target Start/End: Original strand, 19127015 - 19127138
Alignment:
Q  127 gacctaacaaattaagaggcctaaagcaaaaaatttcat-ttgaacctttaaaattattatttttataacataatatttatataaaaccaattttgtgca 225  Q
    |||| ||||||||||||||| ||||||||||||||| || |||  |||||||||||||||||||||  | | || |||||||||||| ||||||| || |    
T  19127015 gacccaacaaattaagaggcttaaagcaaaaaatttaatgttg--cctttaaaattattattttta--atagaagatttatataaaatcaattttatgga 19127110  T
Q  226 gaccaaaatttgaattcatgaccaagag 253  Q
    |||||| ||||||||| |||||||||||    
T  19127111 gaccaacatttgaatttatgaccaagag 19127138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 24504296 - 24504419
Alignment:
Q  121 agggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaatttt 220  Q
    |||||||||| || | |||||||| | |||| |||||||||| || ||  |||| |||| |||| ||||||  ||| ||||||||||||||| |||||||    
T  24504296 agggccgacccaatagattaagagacataaatcaaaaaatttaatgtgg-ccttcaaaaatatttttttta--acaaaatatttatataaaatcaatttt 24504392  T
Q  221 gtgcagaccaaaatttgaattcatgac 247  Q
    ||| |||||||||||||||||||||||    
T  24504393 gtggagaccaaaatttgaattcatgac 24504419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 35759103 - 35759174
Alignment:
Q  174 ttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatg 245  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||  ||| |||||||||||||||||||||    
T  35759103 ttaaaattattatttttttaacagaatatttatataaaatcaattccgtggagaccaaaatttgaattcatg 35759174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 2746633 - 2746751
Alignment:
Q  132 aacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaa 231  Q
    |||||||||||||| ||||||||||||||||  | ||  | ||||||| |||| | ||||  ||| ||||||||||||||  ||||||||   ||| |||    
T  2746633 aacaaattaagaggtctaaagcaaaaaatttattgtgg-cttttaaaaatattttcttta--acaaaatatttatataaattcaattttgctgagaacaa 2746729  T
Q  232 aatttgaattcatgaccaagag 253  Q
    ||||||||||||||| ||||||    
T  2746730 aatttgaattcatgatcaagag 2746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 37941206 - 37941291
Alignment:
Q  173 tttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    |||||||||||||||||||  | | ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||| ||||    
T  37941206 tttaaaattattattttta--atagaatatttatataaaatcaattttgttgagaccaaaatttgaattcatgaccaagagtaattga 37941291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 28440940 - 28440843
Alignment:
Q  170 acctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    |||||||||| |||| ||||||  ||| ||||||||||||||| |||||||||| |||  |||||||||||| ||||||||||||| ||||||| |||||    
T  28440940 acctttaaaaatattgttttta--acagaatatttatataaaatcaattttgtggagattaaaatttgaatttatgaccaagagtaattgaagccttttt 28440843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 255
Target Start/End: Original strand, 41732188 - 41732305
Alignment:
Q  137 attaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatattt-atataaaaccaattttgtgcagaccaaaatt 235  Q
    ||||||||||||||| | |||| ||| || ||  ||||||||| ||| |||||| ||||||||||||| |||||||| ||||||| || ||| |||||||    
T  41732188 attaagaggcctaaaactaaaattttaatatgg-cctttaaaaatat-atttttctaacataatattttatataaaatcaattttatggagatcaaaatt 41732285  T
Q  236 tgaattcatgaccaagagta 255  Q
    ||||||||||||||||||||    
T  41732286 tgaattcatgaccaagagta 41732305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 269
Target Start/End: Original strand, 24209143 - 24209278
Alignment:
Q  132 aacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattttgtgcagaccaa 231  Q
    |||| ||||||||| |||||||||||| ||| || ||  ||||||||| ||| || ||| ||||| ||||||||||||||| | |||||||  |||  ||    
T  24209143 aacagattaagaggtctaaagcaaaaattttaatgtgg-cctttaaaaatat-atatttttaacagaatatttatataaaatctattttgttgagattaa 24209240  T
Q  232 aatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    ||||||||||||||||||| |||| ||||||| |||||    
T  24209241 aatttgaattcatgaccaatagtaattgaagcattttt 24209278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 33106119 - 33106034
Alignment:
Q  184 tatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    ||||||| ||| | ||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||| |||| || |||||    
T  33106119 tatttttttaatagaatgtttatataaaatcaattttgtggagaccaaaatttgaattcatgacctagagtaattgaggcattttt 33106034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 24585306 - 24585220
Alignment:
Q  184 tatttttataacataatatttatataaaaccaattttgt-gcagaccaaaatttgaattcatgaccaagagtacttgaagctttttt 269  Q
    ||||||| ||||  |||||||||||||||  |||||| | | ||||||||| ||||||||||||||||||||| || |||| |||||    
T  24585306 tatttttttaacggaatatttatataaaattaatttttttggagaccaaaacttgaattcatgaccaagagtagttaaagcattttt 24585220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 3860904 - 3860979
Alignment:
Q  184 tatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    |||||||  |||| || |||||||||||| ||||||||||  ||||||||||| ||||||||| | |||||| ||||    
T  3860904 tattttttcaacagaacatttatataaaatcaattttgtg-ggaccaaaatttaaattcatgatctagagtaattga 3860979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 29020011 - 29019938
Alignment:
Q  187 ttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    |||| ||||| ||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||| ||||    
T  29020011 ttttttaacagaatatttatataaaatcaattttgaggagaccgaaatttgaattcatgaccaagagtaattga 29019938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 26536549 - 26536473
Alignment:
Q  184 tatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    ||||||| ||||| ||||||||||||||| |||||||||| ||||||||| ||||||| |||||||| |||| ||||    
T  26536549 tatttttttaacagaatatttatataaaatcaattttgtggagaccaaaacttgaatttatgaccaaaagtaattga 26536473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 26104444 - 26104508
Alignment:
Q  196 ataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    |||||| |||||||||| ||||| |||| |||  |||||||||||||||||||||||||| ||||    
T  26104444 ataatagttatataaaatcaattgtgtggagattaaaatttgaattcatgaccaagagtaattga 26104508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 52032746 - 52032868
Alignment:
Q  132 aacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaac-caattttgtgcagacca 230  Q
    |||| |||||||||||| || |||||||||| || ||  ||||||||| |||| ||||||  ||| |||||||| ||||||  |||||||||| ||||||    
T  52032746 aacagattaagaggcctgaaacaaaaaatttaatgtgc-cctttaaaaatatttttttta--acaaaatatttaaataaaaatcaattttgtggagacca 52032842  T
Q  231 ---aaatttgaattcatgaccaagag 253  Q
       |||||||||||||||||||||||    
T  52032843 ccaaaatttgaattcatgaccaagag 52032868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 53461648 - 53461704
Alignment:
Q  206 tataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttgaag 262  Q
    ||||||| |||||||||| | ||||||||||||||| |||||||||| || ||||||    
T  53461648 tataaaatcaattttgtggataccaaaatttgaatttatgaccaagaataattgaag 53461704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 7412 - 7533
Alignment:
Q  120 cagggccgacctaacaaattaagaggcctaaagcaaaaaatttcatttgaacctttaaaattattatttttataacataatatttatataaaaccaattt 219  Q
    ||||||||||| |||  ||||||||||||||||||||| |||| || ||  |||||||||||||||||||| ||||| ||||| |||| || | ||||||    
T  7412 cagggccgacccaacggattaagaggcctaaagcaaaagatttaatgtg-gcctttaaaattattattttt-taacagaatatatataaaatatcaattt 7509  T
Q  220 tgtgcagaccaaaatttgaattca 243  Q
    | |  |||||||||||| ||||||    
T  7510 tatagagaccaaaatttcaattca 7533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 2375 - 2300
Alignment:
Q  184 tatttttataacataatatttatataaaaccaattttgtgcagaccaaaatttgaattcatgaccaagagtacttga 260  Q
    ||||||| ||||| ||||||  ||||||| ||||||| |  ||| ||||||||||||||||||||||||||| ||||    
T  2375 tatttttctaacaaaatattg-tataaaatcaattttatagagatcaaaatttgaattcatgaccaagagtaattga 2300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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