View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_high_34 (Length: 251)
Name: NF1712_high_34
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_high_34 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 47649703 - 47649835
Alignment:
| Q |
1 |
taagccacgacaatatcccgatcgctctcccacaactgattcaaaagcaatattcacaatcacatctttatcagtgtccccatatccagcttgtaagtaa |
100 |
Q |
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| T |
47649703 |
taagccacgacaatatcccaatcgccctcccacaactgattcaaaagcaatattcgcaatgacatctttatcagtgtccccatatccagcttgtaagtaa |
47649802 |
T |
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| Q |
101 |
actgaagaagtttcttcaaccttcatctattta |
133 |
Q |
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| T |
47649803 |
actgaagaagtttcttcaaccttcgtctattta |
47649835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 47649940 - 47650061
Alignment:
| Q |
129 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
228 |
Q |
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|||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47649940 |
atttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttttggtttcaggatctctctaaaagcaaattttc |
47650038 |
T |
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| Q |
229 |
atcatcacagaatataaatacat |
251 |
Q |
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| T |
47650039 |
atcatcacaaaatataaatacat |
47650061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 170884 - 170762
Alignment:
| Q |
129 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
228 |
Q |
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| T |
170884 |
atttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttagcctcctttttggtttcgggatctctctaaaagcaaattttc |
170785 |
T |
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| Q |
229 |
atcatcacagaatataaatacat |
251 |
Q |
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| T |
170784 |
atcattgcaaaatataaatacat |
170762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 171049 - 170993
Alignment:
| Q |
70 |
atcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcat |
126 |
Q |
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| T |
171049 |
atcagtgtcctcatatccagcttgtaagaaaactgaagaagtttcttcaaccttcat |
170993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 91862 - 91993
Alignment:
| Q |
2 |
aagccacgacaatatcccgatcgctctcccacaactgattcaaaagcaatattcacaatcacatctttatcagtgtccccatatccagcttgtaagtaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||||||||| |||||||||||||| || || | |
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| T |
91862 |
aagccacgacaatatcccgatcgctctcccacaactgatttaaaagcaatattcataattaaatctttatcagtgttcccatatccagcttctaggtgat |
91961 |
T |
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| Q |
102 |
ctgaagaagtttcttcaaccttcatctattta |
133 |
Q |
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| T |
91962 |
atgaagaagcttcttcaaccctcatctattta |
91993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 92098 - 92220
Alignment:
| Q |
129 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
228 |
Q |
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|||||||||||| || ||| ||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||| |
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| T |
92098 |
atttatccattctccgttgttgtttatgtgagtcattctccataaatccttatagttgtgctccttttcagtttcaagatctctctaaaagcaaattttc |
92197 |
T |
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| Q |
229 |
atcatcacagaatataaatacat |
251 |
Q |
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||| ||||| ||||||||||||| |
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| T |
92198 |
atcgtcacaaaatataaatacat |
92220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 30753873 - 30753951
Alignment:
| Q |
43 |
aaaagcaatattcacaatcacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaacc |
121 |
Q |
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| T |
30753873 |
aaaagcaatattcgtaatcacatctttatcggtgtccccatatctagtttctgagtaatcagaagaagcttcttcaacc |
30753951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 30754130 - 30754190
Alignment:
| Q |
187 |
ggctccttttcggtttcaggatctc--tctaaaagcaaattttcatcatcacagaatataa |
245 |
Q |
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| T |
30754130 |
ggctccttttcagtttcacgatctctctctaaaagcatattttcatcatcacaaaatataa |
30754190 |
T |
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