View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_high_38 (Length: 249)
Name: NF1712_high_38
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 41491229 - 41491007
Alignment:
| Q |
17 |
agttaacacagcagcattaagcacagcactattcaataatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcac |
116 |
Q |
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| T |
41491229 |
agttaacacagcagcattaagcacagcactattcaacaatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcac |
41491130 |
T |
|
| Q |
117 |
tctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41491129 |
tctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctc |
41491030 |
T |
|
| Q |
217 |
actttgatcttgccatgcctatg |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
41491029 |
actttgatcttgccatgcctatg |
41491007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 23858849 - 23858631
Alignment:
| Q |
21 |
aacacagcagcattaagcacagcactattcaataatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctg |
120 |
Q |
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| T |
23858849 |
aacacagcagcattaagcactgctttgttcaacaatggtttaagctgtggtgcttgttttgagataaagtgtgcaaatgacaaagagtggtgtcattctg |
23858750 |
T |
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| Q |
121 |
gtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactt |
220 |
Q |
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| T |
23858749 |
ggagtccttcaattttcattactgctactaacttttgtcctcctaattttgctcaagcaagtgataatggtggttggtgtaaccctcctcgtcctcattt |
23858650 |
T |
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| Q |
221 |
tgatcttgccatgcctatg |
239 |
Q |
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| T |
23858649 |
tgatcttgctatgcctatg |
23858631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 22314215 - 22313997
Alignment:
| Q |
21 |
aacacagcagcattaagcacagcactattcaataatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctg |
120 |
Q |
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| T |
22314215 |
aacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccacgttggtgtaaccctg |
22314116 |
T |
|
| Q |
121 |
gtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactt |
220 |
Q |
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| | ||| || || || ||||| || || |||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||| ||| | |||||||| |
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| T |
22314115 |
gaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactt |
22314016 |
T |
|
| Q |
221 |
tgatcttgccatgcctatg |
239 |
Q |
| |
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||||||||| ||||||||| |
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| T |
22314015 |
tgatcttgctatgcctatg |
22313997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 45506957 - 45506886
Alignment:
| Q |
153 |
ttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgat |
224 |
Q |
| |
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|||||||| || |||||||| | |||| ||||||||||||||||||||| || ||| | |||||||||||| |
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| T |
45506957 |
ttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat |
45506886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 45512417 - 45512346
Alignment:
| Q |
153 |
ttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgat |
224 |
Q |
| |
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|||||||| || |||||||| | |||| ||||||||||||||||||||| || ||| | |||||||||||| |
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| T |
45512417 |
ttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat |
45512346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 3745085 - 3745138
Alignment:
| Q |
27 |
gcagcattaagcacagcactattcaataatggactaagttgtggttcttgtttt |
80 |
Q |
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|||||| |||||||||| ||||||||||||||||| | ||||||| | |||||| |
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| T |
3745085 |
gcagcactaagcacagctctattcaataatggacttacttgtggtgcatgtttt |
3745138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 34207875 - 34207657
Alignment:
| Q |
21 |
aacacagcagcattaagcacagcactattcaataatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || | |||||||| || |||||||| || |||||| | ||||| ||||| ||| ||| |
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| T |
34207875 |
aacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgtgttttgagttaaagtgttccaatgatcctagttggtgccaccctg |
34207776 |
T |
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| Q |
121 |
gtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactt |
220 |
Q |
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| || ||||| || || | || ||||| || |||||||| || || ||||||||| | ||||| ||||| ||||||||||||||||| || || ||||| |
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| T |
34207775 |
gaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctcaagcaagtgataatggaggttggtgtaaccctccacgaccacactt |
34207676 |
T |
|
| Q |
221 |
tgatcttgccatgcctatg |
239 |
Q |
| |
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||||||||| ||||||||| |
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| T |
34207675 |
tgatcttgctatgcctatg |
34207657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 38165269 - 38165331
Alignment:
| Q |
147 |
actaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcct |
209 |
Q |
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||||| |||||||| || |||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
38165269 |
actaatttttgtcccccaaactttgctcttcctagtgacaatggtggttggtgtaatcctcct |
38165331 |
T |
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