View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1712_high_41 (Length: 244)
Name: NF1712_high_41
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_high_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23955361 - 23955123
Alignment:
| Q |
1 |
tcgtcttaagaaaatacagaacttttcctaatgaaataaacgcccattgtcgaaacaaacgagattttttcatttgactttgtatcaaagacggacgcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23955361 |
tcgtcttaagaaaatacagaacttttcctaatgaaataaacgcccattgtcgaaacaaacgagattttttcatttgactttgtatcaaagacggacgcca |
23955262 |
T |
|
| Q |
101 |
cgtgcaaacttcctctaaaaatggaacaaaatgtttttcttcgggttttaaatcatccaaatctataaattgtcttaatgttaaatccgtaccttgaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23955261 |
cgtgcaaacttcctctaaaaatggaacaaaatgtttttcttcgggttttaaaccatccaaatctataaattgtcttaatgttaaatccgtaccttgaatc |
23955162 |
T |
|
| Q |
201 |
tctccttcatctggactagatgttgaacctgatattctt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23955161 |
tctccttcatctggactagatgttgaacctgatgttctt |
23955123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University