View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_high_48 (Length: 226)
Name: NF1712_high_48
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 22132056 - 22132224
Alignment:
| Q |
1 |
aataagagttgccactaacatacaagcgtttgatctatcctttatccaattattcccttcttcaaccaatggtttatgttcttcaatgaacacttcccgg |
100 |
Q |
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| T |
22132056 |
aataagagttgccactaacatacaagcgtttgatctatcctttatccaattattcccttcttcaaccaatggtttatgttcttcaatgaacacttcccga |
22132155 |
T |
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| Q |
101 |
gctgttttaccatcattgtttttaactactttatggagagggtgatccaatttctctacttcctgttaa |
169 |
Q |
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| T |
22132156 |
gctgttttaccatttttgtttttaactactttatggagagggtgatccaatttctctacttcctgttaa |
22132224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 18948747 - 18948579
Alignment:
| Q |
1 |
aataagagttgccactaacatacaagcgtttgatctatcctttatccaattattcccttcttcaaccaatggtttatgttcttcaatgaacacttcccgg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
18948747 |
aataagagttgccactaacatacaaccgtttgatctatcccttatccaattattcccttcttcaaccattggtttatgttcttcaatgaacacttctcgg |
18948648 |
T |
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| Q |
101 |
gctgttttaccatcattgtttttaactactttatggagagggtgatccaatttctctacttcctgttaa |
169 |
Q |
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| T |
18948647 |
gctgttttaccatttttgtttttaactactttatggaaagggtgattcaatttctctacttcctgttaa |
18948579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 21961386 - 21961554
Alignment:
| Q |
1 |
aataagagttgccactaacatacaagcgtttgatctatcctttatccaattattcccttcttcaaccaatggtttatgttcttcaatgaacacttcccgg |
100 |
Q |
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| T |
21961386 |
aataagagttgccactaacatacaagcgtttgatctatcctttacccaattattcccttcttcaaccaattgtttatgttcttcaatgaacacttcccgg |
21961485 |
T |
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| Q |
101 |
gctgttttaccatcattgtttttaactactttatggagagggtgatccaatttctctacttcctgttaa |
169 |
Q |
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|||||||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
21961486 |
gctgttttaccatcgctgttcttaacgtctttatggagagggtggtccaatttctctacttcctgttaa |
21961554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 21743254 - 21743420
Alignment:
| Q |
1 |
aataagagttgccactaacatacaagcgtttgatctatcctttatccaattattcccttcttcaaccaatggtttatgttcttcaatgaacacttcccgg |
100 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||| | ||||| ||||| ||||| |||| |||| || |
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| T |
21743254 |
aataagagttgccactaacatacaagagtttgatgtatccttcatccaatttttcccttcttctagcaatgtcttatgctcttccttgaaaacttgccaa |
21743353 |
T |
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| Q |
101 |
gctgttttaccatcattgtttttaactactttatggagagggtgatccaatttctctacttcctgtt |
167 |
Q |
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| T |
21743354 |
gctgttttaccatcgttgttcttaacgtctttatggagagggtggtccaatttctctacttcctgtt |
21743420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 22132289 - 22132333
Alignment:
| Q |
166 |
ttaacatagataaaatttcatgtgaagttaaatatagctttatgt |
210 |
Q |
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| T |
22132289 |
ttaacatagataaaatttcatgtgaagttaaatatagctttatgt |
22132333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 18948510 - 18948466
Alignment:
| Q |
166 |
ttaacatagataaaatttcatgtgaagttaaatatagctttatgt |
210 |
Q |
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| T |
18948510 |
ttaacattgataaaatttcatgtgaagttaaatatagctttatgt |
18948466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 39751968 - 39751802
Alignment:
| Q |
1 |
aataagagttgccactaacatacaagcgtttgatctatcctttatccaattattcccttcttcaaccaatggtttatgttcttcaatgaacacttcccgg |
100 |
Q |
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|||||||||||| ||||||||||||| ||||||| ||||||| |||||||| ||||||||||||| ||||| |||||||||||| ||||||||| || |
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| T |
39751968 |
aataagagttgctactaacatacaagagtttgatgtatccttcatccaatttttcccttcttcaagcaatgctttatgttcttccttgaacacttgccat |
39751869 |
T |
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| Q |
101 |
gctgttttaccatcattgtttttaactactttatggagagggtgatccaatttctctacttcctgtt |
167 |
Q |
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||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39751868 |
gctgttttaccttcttggtttttaacttctttatggagagggtgatccaatttctctacttcctgtt |
39751802 |
T |
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