View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_11 (Length: 436)
Name: NF1712_low_11
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_11 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 47650038 - 47650306
Alignment:
| Q |
11 |
catcatcacagaatataaatacatataagttatcaagtcaatgacaaatataccnnnnnnntggagatttgatcttttatattttaccgcgtcatagcta |
110 |
Q |
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| T |
47650038 |
catcatcacaaaatataaatacatgtaagttatcaagtcaatgacaaatataccaacaaaa-ggagatttgatattttatattttaccgcatcatagcta |
47650136 |
T |
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| Q |
111 |
acagcttgaaatgacttccttccacatctatgattaataactt-tttagatttatttgatttgttcctgttactaatttcctgtaaataacacaaataga |
209 |
Q |
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| T |
47650137 |
acggcttgaaatgacttccttccacatctatgatttataacttgtttagatttatttgatttgttcctgtaactaatttcctgtaaataatacaagtaga |
47650236 |
T |
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| Q |
210 |
aatatagtagatgtttacgtataaaattaaa-----tata-ggatatagtaaatctaatacaaacatacc |
273 |
Q |
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| T |
47650237 |
aatatagtatatgtttacgtataaaattaaattacctatatttatatagtaaatctaatacaaacatacc |
47650306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 170774 - 170660
Alignment:
| Q |
22 |
aatataaatacatataagttatcaagtcaatgacaaatataccnnnnnnntggagatttgatcttttatattttaccgcgtcatagctaacagcttgaaa |
121 |
Q |
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| T |
170774 |
aatataaatacatataagttatcaagtcaatgacaaatatactaggaaaaaggagatttgatattatatattttaccgcgtcatagctaacagcttgaaa |
170675 |
T |
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| Q |
122 |
tgacttccttccaca |
136 |
Q |
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| T |
170674 |
tgacttccttccaca |
170660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 170641 - 170609
Alignment:
| Q |
209 |
aaatatagtagatgtttacgtataaaattaaat |
241 |
Q |
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| T |
170641 |
aaatatagtagatgtttacgtatagaattaaat |
170609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 30754173 - 30754353
Alignment:
| Q |
11 |
catcatcacagaatataaatacatataagttatcaagtcaatgacaaatataccnnnnnnntggagatttgatctttt---atattttaccgcgtcatag |
107 |
Q |
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| T |
30754173 |
catcatcacaaaatataattagatataagttatcaagtcaatgataaatataccaaaaaaagagagattttatatttttttatattataccgcgtcatag |
30754272 |
T |
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| Q |
108 |
ctaacagcttgaaatgacttccttccacatctatgattaataactt-tttagatttatttgatttgttcctgttactaatt |
187 |
Q |
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| T |
30754273 |
ctaacaacttgaaataaattccttccacgtctacaattaataacttgtttagacttatttaatttgttccttttactaatt |
30754353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 37332844 - 37332924
Alignment:
| Q |
139 |
tatgattaataactt-tttagatttatttgatttgttcctgttactaatttcctgtaaataacacaaatagaaatatagta |
218 |
Q |
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| T |
37332844 |
tatgattaataacttgttttgctttatttgatttgttcctttcgctaattgcctgtaaataatacaaatagaaatatagta |
37332924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 92197 - 92250
Alignment:
| Q |
11 |
catcatcacagaatataaatacatataagttatcaagtcaatgacaaatatacc |
64 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
92197 |
catcgtcacaaaatataaatacatataagttatcaagtcaatgataaatatacc |
92250 |
T |
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