View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_13 (Length: 423)
Name: NF1712_low_13
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 183 - 413
Target Start/End: Complemental strand, 45719508 - 45719290
Alignment:
| Q |
183 |
gatttgataggttatttataaatagcgcttatgctagaagagcttcattaagttgtttatccaaacagtgtctatactctttgtttatttattctgtagc |
282 |
Q |
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| T |
45719508 |
gatttgataggttatttataaatagcgcttatgctagaagagcttcattaagttctttatccaaacagtgtct------------tatttattctgtagc |
45719421 |
T |
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| Q |
283 |
ttggaatggcgagtgctcttgagaccctttgtggccaagcttacggcgcaagacaataccacatgttgggtgtttatttacagcgttcttgggttgttct |
382 |
Q |
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| T |
45719420 |
ttggaatggcgagtgctcttgagaccctttgtggccaagcttacggcgcaagacaataccacatgttgggtgtttatttacagcgttcttgggttgttct |
45719321 |
T |
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| Q |
383 |
gttcttttcttcaattttgttgctacctatg |
413 |
Q |
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| T |
45719320 |
gttcttttcttcaattttgttgctacctatg |
45719290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 45719678 - 45719549
Alignment:
| Q |
20 |
ctccatcaccgtcgtctctcaatctttcgctggccatctcaatgatctcgacctcgccgccatttccattgcctgcaccctcctcattgccatcactttc |
119 |
Q |
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| T |
45719678 |
ctccatcaccgtcgtctctcaatctttcgctggccatctcaatgatctcgacctcgccgccatttccattgcttgcaccctcctcattgccatcactttc |
45719579 |
T |
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| Q |
120 |
ggcttcttggtacacctcaacattactttc |
149 |
Q |
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| T |
45719578 |
ggcttcttggtacacctcaacattactttc |
45719549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 22343527 - 22343483
Alignment:
| Q |
212 |
tatgctagaagagcttcattaagttgtttatccaaacagtgtcta |
256 |
Q |
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| T |
22343527 |
tatgctataagagcttaattaagttatttatccaaacaatgtcta |
22343483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 26516222 - 26516180
Alignment:
| Q |
206 |
agcgcttatgctagaagagcttcattaagttgtttatccaaac |
248 |
Q |
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| T |
26516222 |
agcgcttatgctataagcgcttaattaagttgtttatccaaac |
26516180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 18704186 - 18704223
Alignment:
| Q |
210 |
cttatgctagaagagcttcattaagttgtttatccaaa |
247 |
Q |
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| T |
18704186 |
cttatgctacaagagcttaattaagttgtttatccaaa |
18704223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 39823268 - 39823312
Alignment:
| Q |
206 |
agcgcttatgctagaagagcttcattaagttgtttatccaaacag |
250 |
Q |
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| T |
39823268 |
agcgcttatgctgtaagcgcttgattaagttgtttatccaaacag |
39823312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 31875705 - 31875749
Alignment:
| Q |
206 |
agcgcttatgctagaagagcttcattaagttgtttatccaaacag |
250 |
Q |
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||||||||||||| || ||||||||||||||| ||||||||||| |
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| T |
31875705 |
agcgcttatgctataaacgcttcattaagttgtctatccaaacag |
31875749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 31341118 - 31341074
Alignment:
| Q |
206 |
agcgcttatgctagaagagcttcattaagttgtttatccaaacag |
250 |
Q |
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||||||||||| | ||| |||| |||||||||||||||||||||| |
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| T |
31341118 |
agcgcttatgcaataagcgcttgattaagttgtttatccaaacag |
31341074 |
T |
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