View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1712_low_15 (Length: 392)

Name: NF1712_low_15
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1712_low_15
NF1712_low_15
[»] chr2 (14 HSPs)
chr2 (1-271)||(4661944-4662214)
chr2 (280-349)||(4662343-4662413)
chr2 (266-309)||(37812342-37812385)
chr2 (266-311)||(2029734-2029779)
chr2 (266-309)||(5711749-5711792)
chr2 (266-309)||(14466484-14466527)
chr2 (266-309)||(16419469-16419512)
chr2 (270-311)||(4662196-4662237)
chr2 (266-311)||(17719365-17719410)
chr2 (266-309)||(5711513-5711556)
chr2 (266-309)||(33606128-33606171)
chr2 (266-309)||(37812572-37812615)
chr2 (266-310)||(94094-94138)
chr2 (266-310)||(37840303-37840347)
[»] chr4 (14 HSPs)
chr4 (266-314)||(27634590-27634638)
chr4 (266-309)||(27634155-27634198)
chr4 (266-309)||(39902637-39902680)
chr4 (266-309)||(21684965-21685008)
chr4 (266-309)||(35788626-35788669)
chr4 (266-309)||(35788861-35788904)
chr4 (269-309)||(6778739-6778779)
chr4 (265-309)||(50543640-50543684)
chr4 (270-309)||(6778521-6778560)
chr4 (266-309)||(22231147-22231190)
chr4 (266-309)||(22845521-22845564)
chr4 (266-309)||(31254481-31254524)
chr4 (266-312)||(35174999-35175045)
chr4 (148-205)||(1460399-1460458)
[»] chr7 (11 HSPs)
chr7 (266-309)||(43688233-43688276)
chr7 (266-309)||(1596561-1596604)
chr7 (266-309)||(21861261-21861304)
chr7 (266-309)||(29469572-29469615)
chr7 (266-309)||(29469807-29469850)
chr7 (266-309)||(3519799-3519842)
chr7 (266-309)||(21861496-21861539)
chr7 (266-309)||(26239990-26240033)
chr7 (266-309)||(40746107-40746150)
chr7 (268-309)||(1596795-1596836)
chr7 (266-310)||(46452598-46452642)
[»] chr5 (16 HSPs)
chr5 (266-309)||(8081188-8081231)
chr5 (266-309)||(24269944-24269987)
chr5 (266-309)||(24346575-24346618)
chr5 (266-309)||(41666831-41666874)
chr5 (266-309)||(41667067-41667110)
chr5 (266-300)||(30758373-30758407)
chr5 (255-309)||(38976861-38976915)
chr5 (268-309)||(30770125-30770166)
chr5 (266-310)||(2063807-2063851)
chr5 (266-309)||(18333539-18333582)
chr5 (266-309)||(19705870-19705913)
chr5 (266-309)||(24528742-24528785)
chr5 (268-310)||(24346813-24346855)
chr5 (266-307)||(9368799-9368840)
chr5 (145-197)||(10668483-10668536)
chr5 (24-80)||(13987097-13987153)
[»] chr8 (13 HSPs)
chr8 (266-312)||(24532495-24532541)
chr8 (266-310)||(10449966-10450010)
chr8 (266-309)||(11232268-11232311)
chr8 (266-309)||(15042744-15042787)
chr8 (266-309)||(25325613-25325656)
chr8 (268-309)||(28069433-28069474)
chr8 (266-310)||(12317012-12317056)
chr8 (266-310)||(39053003-39053047)
chr8 (266-309)||(5932023-5932066)
chr8 (266-309)||(11232503-11232546)
chr8 (266-309)||(35682855-35682898)
chr8 (268-309)||(39052770-39052811)
chr8 (266-310)||(5590442-5590486)
[»] chr6 (14 HSPs)
chr6 (266-311)||(33796291-33796336)
chr6 (266-309)||(4868651-4868694)
chr6 (266-309)||(12330364-12330407)
chr6 (266-309)||(13353168-13353211)
chr6 (266-309)||(13353403-13353446)
chr6 (266-309)||(33796528-33796571)
chr6 (268-309)||(17147736-17147777)
chr6 (266-310)||(4868887-4868931)
chr6 (266-309)||(9704987-9705030)
chr6 (266-309)||(9705221-9705264)
chr6 (270-312)||(25065172-25065214)
chr6 (268-310)||(30505469-30505511)
chr6 (270-311)||(24554082-24554123)
chr6 (270-310)||(6400924-6400964)
[»] chr3 (13 HSPs)
chr3 (268-309)||(20303013-20303054)
chr3 (268-309)||(20327690-20327731)
chr3 (266-310)||(16927023-16927067)
chr3 (266-309)||(16239558-16239601)
chr3 (268-309)||(20303140-20303181)
chr3 (266-309)||(4155526-4155569)
chr3 (266-309)||(35038268-35038311)
chr3 (266-309)||(35038502-35038545)
chr3 (266-309)||(54567859-54567902)
chr3 (266-311)||(27086552-27086597)
chr3 (268-309)||(38791526-38791567)
chr3 (268-308)||(20327564-20327604)
chr3 (266-310)||(22729066-22729110)
[»] scaffold0519 (2 HSPs)
scaffold0519 (266-309)||(2118-2161)
scaffold0519 (266-309)||(1883-1926)
[»] chr1 (13 HSPs)
chr1 (266-309)||(4112845-4112888)
chr1 (266-309)||(20208600-20208643)
chr1 (266-309)||(35772231-35772274)
chr1 (268-310)||(17452904-17452946)
chr1 (267-309)||(26176875-26176917)
chr1 (266-309)||(855948-855991)
chr1 (266-309)||(4112614-4112657)
chr1 (266-309)||(4113080-4113123)
chr1 (266-309)||(13386215-13386258)
chr1 (266-313)||(15986407-15986454)
chr1 (266-309)||(38080572-38080615)
chr1 (266-312)||(52650845-52650891)
chr1 (266-306)||(2859466-2859506)
[»] scaffold0729 (2 HSPs)
scaffold0729 (269-309)||(2476-2516)
scaffold0729 (270-309)||(2696-2735)
[»] scaffold0060 (1 HSPs)
scaffold0060 (266-309)||(20542-20585)
[»] scaffold0001 (1 HSPs)
scaffold0001 (266-308)||(429841-429883)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 4661944 - 4662214
Alignment:
Q  1 accctaaagagaaagggtgatttctcctttggtcttcttcttcctcatctctattttctatatgttcacaattgctaacatgatttgagagtcgggttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4661944 accctaaagagaaagggtgatttctcctttggtcttcttcttactcatctcttttttctatatgttcacaattgctaacatgatttgagagtcgggttat 4662043  T
Q  101 ggattgcaatgtgggaattgaattcaagcccacggtagggatgaagggttggtattgaagttgtttgtagtttgtttagtctcactttgctaaggttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4662044 ggattgcaatgtgggaattgaattcaagcccacggtagggatgaagggttggtattgaagttgtttgtagtttgtttagtctcactttgttaaggttttc 4662143  T
Q  201 gggtttattgggtatataaatgtacatgaaccccctcgctctttgagataattttgttaagagtcacacat 271  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  4662144 gggtttatcgggtatataaatgtacatgaacaccctcgctctttgagataattttgttaagagtcccacat 4662214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 4662343 - 4662413
Alignment:
Q  280 catgtcctatccgatgtgggagtcttaacaaattttaaggc-tgggatgcaaacccatttaacaacaacaa 349  Q
    |||||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  4662343 catgtcttatccgatgtgggagtcttaacaaatttttaggcttggaatgcaaacccatttaacaacaacaa 4662413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 37812342 - 37812385
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  37812342 acacattgtcaggccatgtcctatccgatgtgggactcttaaca 37812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 2029779 - 2029734
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaa 311  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2029779 acacattgtcaggtcatgtcctatccgatgtgggactcttaacaaa 2029734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 5711749 - 5711792
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  5711749 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 5711792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 14466484 - 14466527
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  14466484 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 14466527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 16419512 - 16419469
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  16419512 acacattgtcagaccatgtcctatccgatgtgggactcttaaca 16419469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 4662237 - 4662196
Alignment:
Q  270 attgtcaggccatgtcctatccgatgtgggagtcttaacaaa 311  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  4662237 attgtcaggtcatgtcctatccgatgtgggactcttaacaaa 4662196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 17719410 - 17719365
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaa 311  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||    
T  17719410 acacattgtcaggccatcacctatccgatgtgggactcttaacaaa 17719365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 5711513 - 5711556
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||    
T  5711513 acacattgtcaggccatttcctttccgatgtgggactcttaaca 5711556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 33606128 - 33606171
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||    
T  33606128 acacattttcaggccatctcctatccgatgtgggactcttaaca 33606171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 37812572 - 37812615
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||| |||||| |||||||||||||| ||||||||    
T  37812572 acacattgtcaggtcatgtcttatccgatgtgggactcttaaca 37812615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 94094 - 94138
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    ||||| |||||||||||  |||||||||||||||| |||||||||    
T  94094 acacactgtcaggccatcacctatccgatgtgggactcttaacaa 94138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 37840347 - 37840303
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    ||||||||||||| ||| |||||||| |||||||| |||||||||    
T  37840347 acacattgtcaggtcatctcctatccaatgtgggactcttaacaa 37840303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 27634590 - 27634638
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaattt 314  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  27634590 acacattgtcaggccatgtcctatccgatgtgggactcttaacagattt 27634638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 27634155 - 27634198
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  27634155 acacattgtcaggccatgtcctatccgatgtgggactcttaaca 27634198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 39902637 - 39902680
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  39902637 acacattgtcaggccatgtcctatccgatgtgggactcttaaca 39902680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 21685008 - 21684965
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  21685008 acacattgtcaggccatgtcctatccgatgtgagactcttaaca 21684965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 35788669 - 35788626
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||    
T  35788669 acacattgtcaggccatgtcctatctgatgtgggactcttaaca 35788626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 35788904 - 35788861
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  35788904 acacattgtcaggccatgttctatccgatgtgggactcttaaca 35788861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 6778739 - 6778779
Alignment:
Q  269 cattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  6778739 cattgtcaggccatgtcatatccgatgtgggactcttaaca 6778779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 50543640 - 50543684
Alignment:
Q  265 cacacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||    
T  50543640 cacacattgtcaggccatcacctatccgatgtgggactcttaaca 50543684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 6778521 - 6778560
Alignment:
Q  270 attgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  6778521 attgtcagaccatgtcctatccgatgtgggactcttaaca 6778560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 22231147 - 22231190
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||    
T  22231147 acacattgtcaggccatatcctatccgatgtaggactcttaaca 22231190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 22845521 - 22845564
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||    
T  22845521 acacattgtcaggccatgtcatatctgatgtgggactcttaaca 22845564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 31254481 - 31254524
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||  |||||||||||||||| ||||||||    
T  31254481 acacattgtcaggccatcacctatccgatgtgggactcttaaca 31254524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 35175045 - 35174999
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaat 312  Q
    ||||||||||||||||||| || |||||||||||| |||||| ||||    
T  35175045 acacattgtcaggccatgttctgtccgatgtgggactcttaataaat 35174999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 1460399 - 1460458
Alignment:
Q  148 gttggtattgaagttgtttgtagtttgt--ttagtctcactttgctaaggttttcgggtt 205  Q
    |||||| |||||||||||||||||||||  || ||||||| ||||| ||||| |||||||    
T  1460399 gttggttttgaagttgtttgtagtttgttatttgtctcacattgctcaggttctcgggtt 1460458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 43688233 - 43688276
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  43688233 acacattgtcaggccatgtcctatccgatgtgggactcttaaca 43688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 1596604 - 1596561
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  1596604 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 1596561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 21861304 - 21861261
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  21861304 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 21861261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 29469615 - 29469572
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  29469615 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 29469572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 29469850 - 29469807
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  29469850 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 29469807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 3519799 - 3519842
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||  |||||||||||||||| ||||||||    
T  3519799 acacattgtcaggccatcacctatccgatgtgggactcttaaca 3519842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 21861539 - 21861496
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||| | ||||||||    
T  21861539 acacattgtcaggccatgtcctgtccgatgtggaactcttaaca 21861496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 26239990 - 26240033
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||    
T  26239990 acacattgtcagaccatgtcctatccgatgtcggactcttaaca 26240033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 40746107 - 40746150
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||    
T  40746107 acacattgtctagccatgtcctatccgatgtgggactcttaaca 40746150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 1596836 - 1596795
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||| |||||||||||| |||||||||||| ||||||||    
T  1596836 acattgttaggccatgtcctgtccgatgtgggactcttaaca 1596795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 46452642 - 46452598
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||  || ||||||||||||||||||||| |||||||||    
T  46452642 acacattgtgtggtcatgtcctatccgatgtgggactcttaacaa 46452598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 8081188 - 8081231
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  8081188 acacattgtcaggccatgtcctatccgatgtgggactcttaaca 8081231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 24269944 - 24269987
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  24269944 acacattgtcaggccatgtcctatccgatgtgggactcttaaca 24269987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 24346575 - 24346618
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  24346575 acacattgtcaggccatgtcctatccgatgtgggactcttaaca 24346618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 41666831 - 41666874
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  41666831 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 41666874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 41667067 - 41667110
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  41667067 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 41667110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 30758373 - 30758407
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtggga 300  Q
    |||||||||||||||||||||||||||||||||||    
T  30758373 acacattgtcaggccatgtcctatccgatgtggga 30758407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 38976861 - 38976915
Alignment:
Q  255 tgttaagagtcacacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||| |||||| |||||||||||| ||||||||||| ||||||||| ||||||||    
T  38976861 tgttgagagtctcacattgtcaggtcatgtcctatctgatgtgggactcttaaca 38976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 30770125 - 30770166
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  30770125 acattgtcaggtcatgtcctatccgatgtgggactcttaaca 30770166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 2063807 - 2063851
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||    
T  2063807 acacattgtcagaccatgttctatccgatgtgggactcttaacaa 2063851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 18333539 - 18333582
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||    
T  18333539 acacattgtcagaccatctcctatccgatgtgggattcttaaca 18333582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 19705913 - 19705870
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||    
T  19705913 acacattgtcaggctatgtcctacccgatgtgggactcttaaca 19705870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 24528785 - 24528742
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| || ||||||||| ||||||||    
T  24528785 acacattgtcaggccatgtcctctcagatgtgggactcttaaca 24528742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 24346813 - 24346855
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||||||||| ||| |||||||||| |||||||||    
T  24346813 acattgtcaggccatgtcttattcgatgtgggactcttaacaa 24346855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 9368840 - 9368799
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaa 307  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||    
T  9368840 acacattgtcatgccatctcctatccgatgtgggactcttaa 9368799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 10668483 - 10668536
Alignment:
Q  145 agggttggtattgaagttgtttgtagtttg-tttagtctcactttgctaaggtt 197  Q
    ||||| ||| |||||||||||||||||||| ||||||||||| ||||| |||||    
T  10668483 agggtgggtgttgaagttgtttgtagtttgttttagtctcacattgctcaggtt 10668536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 13987097 - 13987153
Alignment:
Q  24 ctcctttggtcttcttcttcctcatctctattttctatatgttcacaattgctaaca 80  Q
    |||||||| |||||||||| ||| ||||| |||| ||||||||||| |||| |||||    
T  13987097 ctcctttgctcttcttctttctcttctctgttttatatatgttcaccattgataaca 13987153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 24532495 - 24532541
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaat 312  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  24532495 acacattgtcaggccatctcctatccgatgtgggactcttaacaaat 24532541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 10450010 - 10449966
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  10450010 acacattgtcaggccatgtcctatccgatgtgagactcttaacaa 10449966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 11232268 - 11232311
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  11232268 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 11232311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 15042744 - 15042787
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  15042744 acacattgtcaggccatgtcgtatccgatgtgggactcttaaca 15042787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 25325656 - 25325613
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
T  25325656 acacattgttaggccatgtcctatccgatgtgggactcttaaca 25325613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 28069433 - 28069474
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  28069433 acattgtcaggccatgtcatatccgatgtgggactcttaaca 28069474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 12317056 - 12317012
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||    
T  12317056 acacattgtcagaccatgtcctgtccgatgtgggactcttaacaa 12317012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 39053003 - 39053047
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||||||||  |||||||||||||||| |||||||||    
T  39053003 acacattgtcaggccatcacctatccgatgtgggactcttaacaa 39053047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 5932023 - 5932066
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||||    
T  5932023 acacattgtcaggccatgtactatctgatgtgggactcttaaca 5932066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 11232503 - 11232546
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  11232503 acacattgtcagaccatgtcctgtccgatgtgggactcttaaca 11232546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 35682855 - 35682898
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||| | ||||||||    
T  35682855 acacattgtcaggccatgtcctgtccgatgtggaactcttaaca 35682898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 39052770 - 39052811
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||  |||||||||||||||| ||||||||    
T  39052770 acattgtcaggccatcacctatccgatgtgggactcttaaca 39052811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 5590442 - 5590486
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||| |||| ||||||||||||||||| ||| |||||    
T  5590442 acacattgtcagaccatctcctatccgatgtgggactctgaacaa 5590486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 33796336 - 33796291
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaa 311  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||    
T  33796336 acacattgtcaggccatgtcctgtccgatgtgggactcttaacaaa 33796291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 4868651 - 4868694
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  4868651 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 4868694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 12330364 - 12330407
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  12330364 acacattgtcagaccatgtcctatccgatgtgggactcttaaca 12330407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 13353211 - 13353168
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  13353211 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 13353168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 13353446 - 13353403
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  13353446 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 13353403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 33796571 - 33796528
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  33796571 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 33796528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 17147736 - 17147777
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  17147736 acattgtcaggtcatgtcctatccgatgtgggactcttaaca 17147777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 4868887 - 4868931
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||| ||||||||||||| |||||||||||| |||||||||    
T  4868887 acacattgccaggccatgtcctgtccgatgtgggactcttaacaa 4868931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 9705030 - 9704987
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||| ||||||||||||||||| || ||||||||    
T  9705030 acacattgtcaggctatgtcctatccgatgtgagactcttaaca 9704987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 9705264 - 9705221
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||    
T  9705264 acacattgttaagccatgtcctatccgatgtgggactcttaaca 9705221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 25065172 - 25065214
Alignment:
Q  270 attgtcaggccatgtcctatccgatgtgggagtcttaacaaat 312  Q
    |||||||| |||||||||||||||||||||| |||||| ||||    
T  25065172 attgtcagaccatgtcctatccgatgtgggactcttaaaaaat 25065214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 30505511 - 30505469
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    ||||||||||||||| |||||||||||||| || |||||||||    
T  30505511 acattgtcaggccatctcctatccgatgtgagactcttaacaa 30505469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 24554123 - 24554082
Alignment:
Q  270 attgtcaggccatgtcctatccgatgtgggagtcttaacaaa 311  Q
    |||||||| |||| ||||||||||||||||| ||||||||||    
T  24554123 attgtcagaccatctcctatccgatgtgggactcttaacaaa 24554082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 6400924 - 6400964
Alignment:
Q  270 attgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||||||| | |||||||||||| |||||||||    
T  6400924 attgtcaggccatgtcatgtccgatgtgggactcttaacaa 6400964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 20303054 - 20303013
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  20303054 acattgtcaggccatgtcctatccgatgtgggactcttaaca 20303013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 20327690 - 20327731
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  20327690 acattgtcaggccatgtcctatccgatgtgggattcttaaca 20327731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 16927023 - 16927067
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  16927023 acacattgtcaggccatgttctatccgatgtgggactcttaacaa 16927067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 16239601 - 16239558
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  16239601 acacattgtcaggccatgtcctatccgatgtgagactcttaaca 16239558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 20303140 - 20303181
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  20303140 acattgtcaggccatgtcatatccgatgtgggattcttaaca 20303181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 4155569 - 4155526
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||    
T  4155569 acacattgtcaggccttgtcctatgcgatgtgggactcttaaca 4155526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 35038268 - 35038311
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||  |||||||||||||||| ||||||||    
T  35038268 acacattgtcaggccatcacctatccgatgtgggactcttaaca 35038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 35038502 - 35038545
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||  |||||||||||||||| ||||||||    
T  35038502 acacattgtcaggccatcacctatccgatgtgggactcttaaca 35038545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 54567902 - 54567859
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||    
T  54567902 acacattgtcaggccatgtcctatccgatataggactcttaaca 54567859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 27086597 - 27086552
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaa 311  Q
    |||||||||||||||||  |||||| ||||||||| ||||||||||    
T  27086597 acacattgtcaggccatcacctatctgatgtgggactcttaacaaa 27086552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 38791526 - 38791567
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||| |||| ||||||||||||||||| ||||||||    
T  38791526 acattgtcagaccatctcctatccgatgtgggactcttaaca 38791567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 20327604 - 20327564
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaac 308  Q
    |||||||  |||||||||||||||||||||||| |||||||    
T  20327604 acattgtttggccatgtcctatccgatgtgggactcttaac 20327564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 22729110 - 22729066
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||| |||| ||||||||||||||||| ||| |||||    
T  22729110 acacattgtcagaccatctcctatccgatgtgggactctgaacaa 22729066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 2161 - 2118
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  2161 acacattgtcaggccatgtcctgtccgatgtgggactcttaaca 2118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 1926 - 1883
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  1926 acacattgtcagaccatgtcctgtccgatgtgggactcttaaca 1883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 4112845 - 4112888
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  4112845 acacattgtcaggccatgtcccatccgatgtgggactcttaaca 4112888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 20208600 - 20208643
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  20208600 acacattgtcagaccatgtcctatccgatgtgggactcttaaca 20208643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 35772274 - 35772231
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  35772274 acacattgtcaggccatctcctatccgatgtgggactcttaaca 35772231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 17452904 - 17452946
Alignment:
Q  268 acattgtcaggccatgtcctatccgatgtgggagtcttaacaa 310  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  17452904 acattgtcaggccatgtcttatccgatgtgggactcttaacaa 17452946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 26176917 - 26176875
Alignment:
Q  267 cacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  26176917 cacattgtcaggccatgtcctgtccgatgtgggactcttaaca 26176875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 855991 - 855948
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  855991 acacattgtcaggccatgtcctatccggtgtggaactcttaaca 855948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 4112614 - 4112657
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||    
T  4112614 acacattgtcatgccatgtcctgtccgatgtgggactcttaaca 4112657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 4113080 - 4113123
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||    
T  4113080 acacattgtcaggccatgtcccatccgatgtgggacttttaaca 4113123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 13386258 - 13386215
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||| |||||||||||||||||||||||| | ||||||||    
T  13386258 acacattgccaggccatgtcctatccgatgtggaactcttaaca 13386215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 15986407 - 15986454
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaatt 313  Q
    |||||||||||||| || ||||||||||||| ||| ||||||||||||    
T  15986407 acacattgtcaggctatctcctatccgatgtaggactcttaacaaatt 15986454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 38080615 - 38080572
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||    
T  38080615 acacattgtcaggccatctcccatccgatgtgggactcttaaca 38080572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 52650845 - 52650891
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaacaaat 312  Q
    |||||||||| |||||| ||||||||||||||||| || ||||||||    
T  52650845 acacattgtccggccatctcctatccgatgtgggactcctaacaaat 52650891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 2859466 - 2859506
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtctta 306  Q
    |||||||||||||||||  |||||||||||||||| |||||    
T  2859466 acacattgtcaggccatcacctatccgatgtgggactctta 2859506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 2516 - 2476
Alignment:
Q  269 cattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  2516 cattgtcaggccatgtcatatccgatgtgggactcttaaca 2476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 2735 - 2696
Alignment:
Q  270 attgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  2735 attgtcagaccatgtcctatccgatgtgggactcttaaca 2696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 20585 - 20542
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaaca 309  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||    
T  20585 acacattgtcaggccatatcctgtccgatgtgggactcttaaca 20542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 429883 - 429841
Alignment:
Q  266 acacattgtcaggccatgtcctatccgatgtgggagtcttaac 308  Q
    |||||||||||||||||  |||||||||||||||| |||||||    
T  429883 acacattgtcaggccatcacctatccgatgtgggactcttaac 429841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University