View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_17 (Length: 362)
Name: NF1712_low_17
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 29293130 - 29292794
Alignment:
| Q |
18 |
tagaattagtgtttggctataatgtgtgtttgatgtttgaataatggcaacttatacacatggaaatgttctaatgtgcagtagcagaggaagccatgga |
117 |
Q |
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| T |
29293130 |
tagaattagtttttggctataatgtgtgtttgatgtttgaataatggcaacttatacacatggaaatgttctaatgtgcagtagcagaggaagccatgga |
29293031 |
T |
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| Q |
118 |
tgaaaatagctcaaataatacagctataggtatttacttctttgaaatttatactttaatgttttctagcatttgtttctttttaagaaatacttattag |
217 |
Q |
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| T |
29293030 |
tgaaaatagctcaaataatacagctataggtatttactt---tgaaatttatactttaatgttttctagcatttgtttctttttaagaaatacttattag |
29292934 |
T |
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| Q |
218 |
tcacaaatatttgttaagagtttcttaaagcttaaaaatgaatttataagtgagagacatcattcactttataaagaattttcgtagggacaaattaacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29292933 |
tcacaaatatttgttaagagtttcttaaagcttaaaaatgaatttataagtgagagacatcattcactttataaagaattttcgtagggacaaattaacc |
29292834 |
T |
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| Q |
318 |
gcaatttaaaatgtaagatgatatcaaaacgtgtaaaacattcat |
362 |
Q |
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| T |
29292833 |
gcaatttaaattgtaag-----atcaaaacgtgtaaaatattcat |
29292794 |
T |
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