View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_18 (Length: 353)
Name: NF1712_low_18
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_18 |
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| [»] scaffold0891 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 4165 - 4507
Alignment:
| Q |
1 |
agtttagtatggtctatgtattttgttgagatgcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgta |
100 |
Q |
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| T |
4165 |
agtttagtatggtctatgtattttgttgagatgcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattatttta |
4264 |
T |
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| Q |
101 |
agttcttatgattgactatatgcaatattttatggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaat |
200 |
Q |
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| T |
4265 |
agttcttatgattgactatatgcaatattttatggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaat |
4364 |
T |
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| Q |
201 |
gtacatatgtcttgaaaatcttggaaacatatatttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttga |
300 |
Q |
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| T |
4365 |
gtacatatgtcttgaaaatcttggaaacatatatttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttga |
4464 |
T |
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| Q |
301 |
ttcctatagtgtttcaactatccatcactgttattctcctatg |
343 |
Q |
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| T |
4465 |
ttcctatagtgttccaactatccatcactgttattctcctatg |
4507 |
T |
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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 35774298 - 35774168
Alignment:
| Q |
8 |
tatggtctatgtattttgttgagatgcaacat------ttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaa |
101 |
Q |
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| T |
35774298 |
tatggtctatatattttgttgagatgcgacatcgacatttctgttctattacttttagctaaactatttccacttaa----taaggtcttattaatgtta |
35774203 |
T |
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| Q |
102 |
gttcttatgattgactatatgcaatattttatggg |
136 |
Q |
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| T |
35774202 |
gttcttaatattaactataagcaatattttctggg |
35774168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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