View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1712_low_19 (Length: 352)
Name: NF1712_low_19
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 6504831 - 6505152
Alignment:
| Q |
16 |
aatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504831 |
aatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaa |
6504930 |
T |
|
| Q |
116 |
caaatcttcagaaataggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgtta |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
6504931 |
caaatcttcagaaataggagccaatggtataagctgaattcctgtcctagcttctctccattcaggtggagcaaaccaaagtccactatctcttttatta |
6505030 |
T |
|
| Q |
216 |
ttccacacaactcccactatcctattctcttttgtaaactcttcttcatacaatttcccattcttcttaacatgccaccacattttggttccaagaattt |
315 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6505031 |
ttccacaaaactcccactattctattctcttttgtaaactcttcttcatacaatttcccattcttcttaacatgccaccacattttggttccaagaattt |
6505130 |
T |
|
| Q |
316 |
ccaatgatgttagggttgatcc |
337 |
Q |
| |
|
||||||||||||| |||||||| |
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|
| T |
6505131 |
ccaatgatgttagtgttgatcc |
6505152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 6516723 - 6516615
Alignment:
| Q |
227 |
tcccactatcctattctcttttgtaaactcttcttcatacaatttcccattcttcttaacatgccaccacattttggttccaagaatttccaatgatgtt |
326 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6516723 |
tcccactatcctattctcttttgtaaactcttcatcatacaatttcccattctttttaacatgccaccacattttggttccaagaatttccaatgatgtt |
6516624 |
T |
|
| Q |
327 |
agggttgat |
335 |
Q |
| |
|
|| |||||| |
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|
| T |
6516623 |
agtgttgat |
6516615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 325
Target Start/End: Complemental strand, 6473853 - 6473561
Alignment:
| Q |
30 |
ttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaa |
129 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||| ||||||||||||| ||||| || || |||||||||||||| ||||||||| ||||||||| |
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| T |
6473853 |
ttccatccttcttcaacacc---ttccctatttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttcagaaa |
6473757 |
T |
|
| Q |
130 |
taggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgttattccacacaactcc |
229 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| |||| ||||| |||| ||||||||||| | |||||| ||||| |||||| ||| | |||||| |
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|
| T |
6473756 |
taggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcc |
6473657 |
T |
|
| Q |
230 |
cactatcctattctcttttgtaaactcttcttcatacaatttcccattcttc-ttaacatgccaccacattttggttccaagaatttccaatgatgt |
325 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||||| | ||| | | |||| || ||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
6473656 |
catcatcctattctcttttgtaaaatcttcctcatagagattctc-tccttcttttacatgccaccacattttagcagcaagaatttccaatgatgt |
6473561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 6462631 - 6462399
Alignment:
| Q |
30 |
ttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaa |
129 |
Q |
| |
|
|||||||||||| |||||||| || || |||||||||||||||||||| |||||||| | || ||||| ||||||||||| ||||| ||||||||| |
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|
| T |
6462631 |
ttccatccttcttcaacaccatct---cttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaa |
6462535 |
T |
|
| Q |
130 |
taggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgttattccacacaactcc |
229 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||| |||||| |||||| ||||||||||||||||||||| ||||| |||||| ||| | || ||| |
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|
| T |
6462534 |
taggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttagaccatagaaatcc |
6462435 |
T |
|
| Q |
230 |
cactatcctattctcttttgtaaactcttcttcata |
265 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
6462434 |
catgatcctgttctcttttgtaaactcttctgcata |
6462399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 301
Target Start/End: Original strand, 6527578 - 6527829
Alignment:
| Q |
50 |
accttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataagc |
149 |
Q |
| |
|
||||||||| || || ||||| |||||||| ||||| || || || ||||| | |||||||||||||| ||||||||||||| | ||| |||| || |
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|
| T |
6527578 |
accttccctttttaaggcaggtaatgtccattcaactagttccttcacatactttgcatcagaaaacaaaacttcagaaataggcgacaagggtaaaact |
6527677 |
T |
|
| Q |
150 |
tgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgttattccacacaactcccactatcctattctcttttg |
249 |
Q |
| |
|
|||| || ||| ||||||||||||||||| ||||||||| | | |||||| ||||| |||||| ||| | |||||||| ||||||||||| |||| |
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|
| T |
6527678 |
tgaacaccaagccttgcttctctccattcagccggagcaaacgacaatccactgtctctcttgttagaccataaaactcccatgatcctattctcctttg |
6527777 |
T |
|
| Q |
250 |
taaactcttcttcatacaatttcccattcttcttaacatgccaccacatttt |
301 |
Q |
| |
|
|||| |||| |||||| | || || | ||| |||||||||||||||||||| |
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|
| T |
6527778 |
taaaatctttttcatagagcttaccgtcctttttaacatgccaccacatttt |
6527829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 6464701 - 6464883
Alignment:
| Q |
30 |
ttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaa |
129 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || || ||| ||||||||| ||||| || |||||||| |
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|
| T |
6464701 |
ttccatccttctccaacacc---ttccctattcaaagcaggcaatgtccactccacaagttccttcacaaaatcaacatttgaaaataagaattcagaaa |
6464797 |
T |
|
| Q |
130 |
taggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgtta |
215 |
Q |
| |
|
| ||| |||||||| |||||||| || |||| |||| ||||||||| ||||||||||| | |||||| ||||| |||||| |
|
|
| T |
6464798 |
ttggaagcaatggtaagagctgaatcccaagcctacattctttccattcaggaggagcaaaccataatccactgtctctcttgtta |
6464883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 6496041 - 6496267
Alignment:
| Q |
30 |
ttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaa |
129 |
Q |
| |
|
|||||||||||| |||||||| || || |||||||||||||||| ||| |||||||| | || ||||| || |||||||| ||||| ||||||||| |
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|
| T |
6496041 |
ttccatccttcttcaacaccatct---cttttcaaagcaggcaatgcccattcaacaagttgcttcacatattcgacatcagagaacaatacttcagaaa |
6496137 |
T |
|
| Q |
130 |
taggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgttattccacacaactcc |
229 |
Q |
| |
|
||||| |||||||| ||||||| ||| |||| |||| | |||| | ||||||||||||||||||||| ||||| ||||| ||| | || ||| |
|
|
| T |
6496138 |
taggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctctcttgttggaccatagaaatcc |
6496237 |
T |
|
| Q |
230 |
cactatcctattctcttttgtaaactcttc |
259 |
Q |
| |
|
|| |||| |||| |||||||||| ||||| |
|
|
| T |
6496238 |
catgatccgattcgcttttgtaaattcttc |
6496267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 6516893 - 6516812
Alignment:
| Q |
63 |
aaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggta |
144 |
Q |
| |
|
|||| |||||||| |||||||||||| ||||| |||||||||||||||||||| ||| |||||||||| ||| |||||||| |
|
|
| T |
6516893 |
aaaggaggcaatgcccactcaacaagttctttcacataatcaacatcagaaaataaaacttcagaaattggacacaatggta |
6516812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 6525755 - 6525920
Alignment:
| Q |
49 |
caccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataag |
148 |
Q |
| |
|
|||| ||||| || |||||||| ||||||||||| ||||| | || ||||| ||||||||| ||||| |||||||||| ||| |||||||| || |
|
|
| T |
6525755 |
caccatccctttttaaagcaggtaatgtccactccacaagtcccttcacatacataacatcagagaacaagacttcagaaattggaagcaatggtaagag |
6525854 |
T |
|
| Q |
149 |
ctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgtt |
214 |
Q |
| |
|
|||||| || |||| |||| |||||||||||||| ||||||| | ||||| ||||||||||| |
|
|
| T |
6525855 |
ctgaatcccaagcctacattctttccattcagctggaccaaaccataaaccactgtctcttttgtt |
6525920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 297
Target Start/End: Complemental strand, 35244678 - 35244542
Alignment:
| Q |
161 |
cctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgttattccacacaactcccactatcctattctcttttgtaaactcttct |
260 |
Q |
| |
|
|||||||| | |||| |||| |||||||||| | || |||||||| || || ||| ||||| |||||||| |||||||||||||||||||| |||| | |
|
|
| T |
35244678 |
cctagcttttttccactcagttggagcaaacaagagaccactatccctcttattagaccacaaaactcccatgatcctattctcttttgtaaaatctttt |
35244579 |
T |
|
| Q |
261 |
tcatacaatttcccattcttcttaacatgccaccaca |
297 |
Q |
| |
|
||||||| || ||| |||| |||||||||||||||| |
|
|
| T |
35244578 |
tcatacatatttccactctttttaacatgccaccaca |
35244542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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