View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1712_low_2 (Length: 612)

Name: NF1712_low_2
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1712_low_2
NF1712_low_2
[»] chr5 (11 HSPs)
chr5 (438-607)||(6665854-6666023)
chr5 (441-593)||(8871429-8871581)
chr5 (438-604)||(32659066-32659232)
chr5 (441-593)||(13854433-13854586)
chr5 (441-557)||(36606360-36606476)
chr5 (315-405)||(32658943-32659033)
chr5 (182-259)||(6665620-6665697)
chr5 (184-259)||(32658816-32658891)
chr5 (354-403)||(6665776-6665825)
chr5 (183-266)||(36606085-36606168)
chr5 (187-259)||(23129852-23129923)
[»] chr3 (28 HSPs)
chr3 (441-593)||(42864455-42864607)
chr3 (441-593)||(959020-959172)
chr3 (441-596)||(4533655-4533810)
chr3 (438-604)||(22976511-22976676)
chr3 (445-593)||(39580082-39580230)
chr3 (492-593)||(53330430-53330531)
chr3 (492-593)||(53334114-53334215)
chr3 (492-593)||(53337791-53337892)
chr3 (441-593)||(39674364-39674514)
chr3 (441-593)||(25041523-25041676)
chr3 (183-281)||(39579802-39579900)
chr3 (187-281)||(27391319-27391413)
chr3 (184-278)||(53330766-53330860)
chr3 (184-278)||(53334450-53334544)
chr3 (184-278)||(53338127-53338221)
chr3 (192-402)||(29359667-29359873)
chr3 (184-281)||(39674088-39674185)
chr3 (184-248)||(53363135-53363199)
chr3 (550-593)||(21869148-21869191)
chr3 (193-236)||(30551669-30551712)
chr3 (183-249)||(42864249-42864315)
chr3 (197-266)||(24645630-24645699)
chr3 (559-604)||(29360010-29360055)
chr3 (438-527)||(29359914-29360002)
chr3 (184-249)||(4533371-4533436)
chr3 (204-247)||(41530477-41530520)
chr3 (336-405)||(22976703-22976773)
chr3 (357-405)||(30551781-30551829)
[»] chr6 (8 HSPs)
chr6 (441-593)||(21112273-21112425)
chr6 (441-593)||(8862215-8862367)
chr6 (184-281)||(8861950-8862047)
chr6 (559-604)||(9150003-9150048)
chr6 (193-258)||(11382423-11382488)
chr6 (244-278)||(11382565-11382599)
chr6 (241-278)||(8862077-8862114)
chr6 (193-249)||(21112008-21112064)
[»] chr8 (19 HSPs)
chr8 (441-598)||(21076155-21076312)
chr8 (441-598)||(20289525-20289682)
chr8 (442-604)||(3046526-3046688)
chr8 (441-590)||(17630906-17631055)
chr8 (441-593)||(17068360-17068512)
chr8 (441-593)||(17579761-17579913)
chr8 (441-593)||(29054747-29054900)
chr8 (492-590)||(34964492-34964590)
chr8 (444-569)||(10861549-10861674)
chr8 (184-281)||(20289270-20289367)
chr8 (184-281)||(21075900-21075997)
chr8 (205-281)||(3046847-3046922)
chr8 (336-402)||(3046729-3046795)
chr8 (187-249)||(17068098-17068160)
chr8 (187-249)||(17580197-17580259)
chr8 (184-281)||(10861855-10861952)
chr8 (192-245)||(10786875-10786928)
chr8 (183-242)||(29054461-29054520)
chr8 (227-281)||(17631223-17631277)
[»] chr4 (6 HSPs)
chr4 (441-593)||(54260310-54260462)
chr4 (194-250)||(32760428-32760484)
chr4 (192-249)||(563350-563407)
chr4 (496-546)||(26261273-26261323)
chr4 (183-228)||(54260055-54260100)
chr4 (231-276)||(54432626-54432671)
[»] chr2 (10 HSPs)
chr2 (442-593)||(14811462-14811613)
chr2 (441-594)||(14314126-14314286)
chr2 (192-250)||(27709936-27709994)
chr2 (552-604)||(13043614-13043666)
chr2 (449-546)||(29081109-29081206)
chr2 (192-259)||(14314486-14314553)
chr2 (184-252)||(32751106-32751174)
chr2 (184-259)||(14811175-14811250)
chr2 (448-542)||(13043727-13043822)
chr2 (204-248)||(29080874-29080918)
[»] scaffold0017 (2 HSPs)
scaffold0017 (441-593)||(37791-37943)
scaffold0017 (187-259)||(38153-38225)
[»] chr7 (29 HSPs)
chr7 (496-593)||(40819671-40819768)
chr7 (441-593)||(19927994-19928144)
chr7 (441-593)||(25443783-25443935)
chr7 (441-593)||(30947745-30947896)
chr7 (183-281)||(37245346-37245444)
chr7 (497-593)||(26279685-26279781)
chr7 (438-604)||(45280929-45281096)
chr7 (492-604)||(22293075-22293187)
chr7 (183-281)||(22205372-22205470)
chr7 (183-281)||(22229269-22229367)
chr7 (438-557)||(22205108-22205227)
chr7 (438-557)||(22229512-22229631)
chr7 (193-279)||(36281529-36281615)
chr7 (182-279)||(40819974-40820071)
chr7 (336-402)||(22205248-22205314)
chr7 (336-402)||(22229425-22229491)
chr7 (181-247)||(26279919-26279985)
chr7 (195-278)||(45280678-45280761)
chr7 (192-249)||(19928354-19928411)
chr7 (184-249)||(25443519-25443584)
chr7 (441-515)||(37243017-37243091)
chr7 (232-279)||(25556691-25556738)
chr7 (184-259)||(30947456-30947531)
chr7 (336-405)||(15043197-15043266)
chr7 (315-375)||(30947681-30947741)
chr7 (554-593)||(36630746-36630785)
chr7 (187-225)||(15043363-15043401)
chr7 (244-284)||(26279791-26279831)
chr7 (244-284)||(40819888-40819928)
[»] chr1 (9 HSPs)
chr1 (442-599)||(33368964-33369117)
chr1 (492-598)||(46397832-46397936)
chr1 (187-278)||(29096170-29096261)
chr1 (198-284)||(41430395-41430481)
chr1 (184-281)||(33368710-33368806)
chr1 (354-405)||(22150619-22150670)
chr1 (187-249)||(46398206-46398268)
chr1 (208-276)||(22150724-22150792)
chr1 (563-599)||(23205967-23206003)
[»] scaffold0274 (1 HSPs)
scaffold0274 (198-284)||(14402-14488)
[»] scaffold0011 (1 HSPs)
scaffold0011 (17-70)||(219739-219792)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 6e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 438 - 607
Target Start/End: Original strand, 6665854 - 6666023
Alignment:
Q  438 ctacaagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaac 537  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||  |||||||||||| |||    
T  6665854 ctacaagtctggcagcgctatcaaaaacatattgtctcttctaacccaaaaaaatagggtttctcgtcaccacatagcgataactattccctcttctaac 6665953  T
Q  538 cattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttgttcatctcact 607  Q
    |||||||||  ||||||||| ||||||||||||||  ||||||||  ||||||||| ||||| |||||||    
T  6665954 cattaccaccaattgaattctactatgtttctctttgctctaatgccatgtttcttatgttcttctcact 6666023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 8871429 - 8871581
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  8871429 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 8871528  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  8871529 taccactaattgaattctactatgtttctcttctctctaatgttatgtttctt 8871581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 438 - 604
Target Start/End: Original strand, 32659066 - 32659232
Alignment:
Q  438 ctacaagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaac 537  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||| |||||| ||||| | |    
T  32659066 ctacaagtctggcaacgctatcaaaaacatattgtctcttctaaccccaaaatatagggtttctcgtcaccacatagcgatagctattccatcttctacc 32659165  T
Q  538 cattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttgttcatctc 604  Q
    ||||||   | ||||||||| |||| ||||||| || ||||||||||||||||||| ||||| ||||    
T  32659166 cattacttatgattgaattctactaagtttctcctccctctaatgttatgtttcttctgttcttctc 32659232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 441 - 593
Target Start/End: Complemental strand, 13854586 - 13854433
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnn-tagggtttctcgtcaccacatagcgatagttattccctcttccaacca 539  Q
    ||||||||||||| ||||||||| |||||||| ||| ||||||         |||||||||||||||||||||||| |||  ||||  |||||| |||||    
T  13854586 caagtctggcagcgctatcaaaatcatattgtctctcctaacctaaaaaaaatagggtttctcgtcaccacatagcaataactattatctcttctaacca 13854487  T
Q  540 ttaccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  13854486 ttaccactgattgaattctactctgtttctcttctctctaatgttatgtttctt 13854433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 441 - 557
Target Start/End: Original strand, 36606360 - 36606476
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  36606360 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 36606459  T
Q  541 taccacttattgaattc 557  Q
    || |||| |||||||||    
T  36606460 tatcactgattgaattc 36606476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 32658943 - 32659033
Alignment:
Q  315 tacgtgtcggatacagctaattaacttgtactccgacatggctaacttgtactccgacaccgatagttttgtcttacatatttccttttaa 405  Q
    |||||||| ||||| ||||| | ||||||||| ||||| ||||||||| ||||| || ||||||| | |||||||||||||||||||||||    
T  32658943 tacgtgtcagatacggctaacttacttgtacttcgacacggctaacttatactctgataccgatactattgtcttacatatttccttttaa 32659033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 6665620 - 6665697
Alignment:
Q  182 ggctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacg 259  Q
    ||||||||| |||||||||||  |||||||||||| |||||||| |||||||||  |||||||||||| || ||||||    
T  6665620 ggctctgaagccccgatactccgaaaatggtgaaggatcgtgtccgacacgtattcgataccgatacgccccgatacg 6665697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 32658816 - 32658891
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacg 259  Q
    |||| |||||||||||||| ||||||  |||||||||||||| ||||| |||||||||| ||||||  ||||||||    
T  32658816 ctctaaaaccccgatactccaaaaataatgaagaatcgtgtccgacacatatctgatactgatacgctctgatacg 32658891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 6665776 - 6665825
Alignment:
Q  354 ggctaacttgtactccgacaccgatagttttgtcttacatatttcctttt 403  Q
    ||||||||| ||||||||||| |||| || ||||||||||||||||||||    
T  6665776 ggctaacttatactccgacactgatatttctgtcttacatatttcctttt 6665825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 36606085 - 36606168
Alignment:
Q  183 gctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcg 266  Q
    ||||| || |||| ||| || ||||||||||||| ||||| ||  ||||||||| |||| |||||||||| |||||| ||||||    
T  36606085 gctctcaagccccaatattccaaaaatggtgaagtatcgtatcctacacgtatccgatatcgatacgtcccgatacgggtatcg 36606168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 23129852 - 23129923
Alignment:
Q  187 tgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacg 259  Q
    |||| ||||||| ||||| ||||| |||||||| |||  | ||||||||||||||| ||||||||| ||||||    
T  23129852 tgaagccccgattctctacaaatgatgaagaattgtga-tcacacgtatctgatacggatacgtcccgatacg 23129923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 42864455 - 42864607
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  42864455 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 42864554  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  42864555 taccactaattgaattctactatgtttctcttctctctaatgttatgtttctt 42864607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 959020 - 959172
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||        |||||||||||||||||||||||  |||| ||||| |||||| ||||||    
T  959020 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagaaatagctattctctcttctaaccat 959119  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  959120 taccactgattgaattctactctgtttctcttctctctaatgttatgtttctt 959172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 441 - 596
Target Start/End: Original strand, 4533655 - 4533810
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||| ||||||| ||||||||| |||||| | ||||||||||        |||||||||||||||||||||| | |||| ||||| |||||| ||||||    
T  4533655 caagtttggcagcgctatcaaaatcatattatctcttctaacctaaaataatagggtttctcgtcaccacataacaatagctattctctcttctaaccat 4533754  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttg 596  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4533755 taccacttattgaattctactctgtttctcttctctctaatgttatgtttcttttg 4533810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 438 - 604
Target Start/End: Complemental strand, 22976676 - 22976511
Alignment:
Q  438 ctacaagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaac 537  Q
    |||||||||| ||||| |||||||||||||||||| |||| ||||||       ||||||||||||||||||||||||||||| |||| ||||||| |||    
T  22976676 ctacaagtctagcagcgctatcaaaaacatattgtctcttttaacccaaaaaa-tagggtttctcgtcaccacatagcgatagctatttcctcttctaac 22976578  T
Q  538 cattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttgttcatctc 604  Q
    |||||||||  ||||||||| ||||||||||| ||||||||||||  ||||||||| ||||| ||||    
T  22976577 cattaccaccgattgaattctactatgtttcttttctctctaatgccatgtttcttctgttcttctc 22976511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 445 - 593
Target Start/End: Original strand, 39580082 - 39580230
Alignment:
Q  445 tctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccattacc 544  Q
    ||||||||| ||||||||| |||| ||| ||||||||||        |||||||||||||||||||||||| |||| ||||| |||| ||||||||||||    
T  39580082 tctggcagcgctatcaaaatcataatgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctctaccaaccattacc 39580181  T
Q  545 acttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  39580182 actgattgaattctactttgtttctcttctctctaatgttatgtttctt 39580230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 492 - 593
Target Start/End: Complemental strand, 53330531 - 53330430
Alignment:
Q  492 tagggtttctcgtcaccacatagcgatagttattccctcttccaaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttc 591  Q
    |||||||||||||||||||||||| |||| ||||| |||||| |||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  53330531 tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttc 53330432  T
Q  592 tt 593  Q
    ||    
T  53330431 tt 53330430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 492 - 593
Target Start/End: Complemental strand, 53334215 - 53334114
Alignment:
Q  492 tagggtttctcgtcaccacatagcgatagttattccctcttccaaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttc 591  Q
    |||||||||||||||||||||||| |||| ||||| |||||| |||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  53334215 tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttc 53334116  T
Q  592 tt 593  Q
    ||    
T  53334115 tt 53334114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 492 - 593
Target Start/End: Complemental strand, 53337892 - 53337791
Alignment:
Q  492 tagggtttctcgtcaccacatagcgatagttattccctcttccaaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttc 591  Q
    |||||||||||||||||||||||| |||| ||||| |||||| |||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||    
T  53337892 tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttc 53337793  T
Q  592 tt 593  Q
    ||    
T  53337792 tt 53337791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 39674364 - 39674514
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    |||||||| |||| ||||||||| |||||||| ||||||||||        |||||||||||||||||||||||| |||| ||||| |||||| |  |||    
T  39674364 caagtctgacagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttcta--cat 39674461  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||| |||  ||||||||||||||||||||||||||||||    
T  39674462 taccactgattgaattctactccgtttctcttctctctaatgttatgtttctt 39674514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 25041523 - 25041676
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnn-tagggtttctcgtcaccacatagcgatagttattccctcttccaacca 539  Q
    |||||||||| || ||||||||| |||||||| ||||||||||         |||||||||||||||||||||||| |||| ||||| || ||  |||||    
T  25041523 caagtctggctgcgctatcaaaatcatattgtctcttctaacctaaaaaaaatagggtttctcgtcaccacatagcaatagctattctcttttttaacca 25041622  T
Q  540 ttaccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    |||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||    
T  25041623 ttaccactgattaaattctactctgtttctcttctctctaatgttatgtttctt 25041676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 39579802 - 39579900
Alignment:
Q  183 gctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    |||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||| |||||| | ||||||||||||    
T  39579802 gctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatctgatactgatacgtcccgatacgggtatcggaaaagtatcgggca 39579900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 27391413 - 27391319
Alignment:
Q  187 tgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||  || |||||| ||| ||| |||||||||    
T  27391413 tgaagcccctatactccaaaaatggtgaagaatcgtgtctgacacgtatccgataccgatacatcccaatgcgcgtaccgatgaaatatcgggca 27391319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 53330860 - 53330766
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgg 278  Q
    ||||||| ||||||||||| ||||||||||||| ||||| || |||| |||||||||||||||||| |  ||||||||||||| | |||||||||    
T  53330860 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgcctcgatacgcgtatcggaaaagtatcgg 53330766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 53334544 - 53334450
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgg 278  Q
    ||||||| ||||||||||| ||||||||||||| ||||| || |||| |||||||||||||||||| |  ||||||||||||| | |||||||||    
T  53334544 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgcctcgatacgcgtatcggaaaagtatcgg 53334450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 53338221 - 53338127
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgg 278  Q
    ||||||| ||||||||||| ||||||||||||| ||||| || |||| |||||||||||||||||| |  ||||||||||||| | |||||||||    
T  53338221 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgcctcgatacgcgtatcggaaaagtatcgg 53338127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 402
Target Start/End: Original strand, 29359667 - 29359873
Alignment:
Q  192 ccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggcagttgataatt 291  Q
    ||||||||||  |||||||  |||||||||||||  ||||||||| |||||||||| |||   |||||||||||  |||||||||||||| || ||| ||    
T  29359667 ccccgatacttcaaaaatgacgaagaatcgtgtccaacacgtatccgataccgatatgtctcaatacgcgtatcagagaagtatcgggcatttaatattt 29359766  T
Q  292 annnnnnngnnnnnnntgattgttacgtgtcggatacagctaattaacttgtactccgacatggctaacttgtactccgacaccgatagttttgtcttac 391  Q
    |       |       | |||| || ||||||||||| |||||    |||||||||||||| || |||||| |||||||||||||||| || || |||||    
T  29359767 atttttttgaaaaaaattattgatatgtgtcggatacggctaa----cttgtactccgacacgggtaacttatactccgacaccgatacttctgacttac 29359862  T
Q  392 atatttccttt 402  Q
    |||||| ||||    
T  29359863 atattttcttt 29359873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 39674088 - 39674185
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    ||||||| ||||||||||  ||||||||||||| ||||| || |||||||||  |||||||||| |||| |||||| |||||  | ||||||||||||    
T  39674088 ctctgaagccccgatacttcaaaaatggtgaagtatcgtatccgacacgtattcgataccgatatgtcccgatacgggtatcagaaaagtatcgggca 39674185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 53363199 - 53363135
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatac 248  Q
    ||||||| ||||||||||| ||||||||||||| ||||| || |||| |||||||||||||||||    
T  53363199 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatac 53363135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 550 - 593
Target Start/End: Original strand, 21869148 - 21869191
Alignment:
Q  550 ttgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  21869148 ttgaattctactatgtttctcttctctctaatgttatgtttctt 21869191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 30551669 - 30551712
Alignment:
Q  193 cccgatactctaaaaatggtgaagaatcgtgtctgacacgtatc 236  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  30551669 cccgatactataaaaatggtgaagaatcgtgtctgacacgtatc 30551712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 42864249 - 42864315
Alignment:
Q  183 gctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    |||||||| |||||| |||| ||||||||||||| ||||| || |||||||||| ||||||||||||    
T  42864249 gctctgaagccccgaaactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacg 42864315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 24645699 - 24645630
Alignment:
Q  197 atactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcg 266  Q
    |||||| |||||||||||||||||||||  |||||||||| ||||| ||||||| | ||||| |||||||    
T  24645699 atactccaaaaatggtgaagaatcgtgttcgacacgtatccgatactgatacgtaccgatactcgtatcg 24645630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 29360010 - 29360055
Alignment:
Q  559 actatgtttctcttctctctaatgttatgtttcttttgttcatctc 604  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  29360010 actatgtttctcttctctctaatgttatgtttcttctgttcttctc 29360055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 438 - 527
Target Start/End: Original strand, 29359914 - 29360002
Alignment:
Q  438 ctacaagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattcc 527  Q
    |||||||||||  ||| |||||||||||||||||| |||||||||||       ||| |||||||||||||| |||||||||| ||||||    
T  29359914 ctacaagtctgatagcgctatcaaaaacatattgtctcttctaaccc-aaaaaatagtgtttctcgtcaccatatagcgatagctattcc 29360002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 4533371 - 4533436
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    ||||||| || |||||||   |||||||||||| ||||| || |||||||||||||||||||||||    
T  4533371 ctctgaagccgcgatacttcgaaaatggtgaagtatcgtatccgacacgtatctgataccgatacg 4533436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 41530520 - 41530477
Alignment:
Q  204 aaaaatggtgaagaatcgtgtctgacacgtatctgataccgata 247  Q
    |||||||||||||||||||||| |||||||||| || |||||||    
T  41530520 aaaaatggtgaagaatcgtgtccgacacgtatccgacaccgata 41530477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 22976773 - 22976703
Alignment:
Q  336 taacttgtactccgacatggctaacttgtactccgacaccga-tagttttgtcttacatatttccttttaa 405  Q
    ||||||||| ||||| | | ||||||| |||||||||||| | || || ||||||||||||||||||||||    
T  22976773 taacttgtattccgatacgactaacttatactccgacaccaaatacttctgtcttacatatttccttttaa 22976703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 30551781 - 30551829
Alignment:
Q  357 taacttgtactccgacaccgatagttttgtcttacatatttccttttaa 405  Q
    |||||| ||||| |||||||||| || ||||||||||||| ||||||||    
T  30551781 taacttatactctgacaccgatacttctgtcttacatattcccttttaa 30551829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 21112273 - 21112425
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  21112273 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 21112372  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  21112373 taccactgattgaattctactctgtttctcttctctctaatgttatgtttctt 21112425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 8862215 - 8862367
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||| ||||| ||||||||| |||||||| ||||||||||        ||||||||||||||||| |||||| |||| ||||| |||||| ||||||    
T  8862215 caagtctagcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccgcatagcaatagctattctctcttctaaccat 8862314  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||    
T  8862315 taccactgattgaattctactctgtttctcttctctataatgttatgtttctt 8862367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 8861950 - 8862047
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    ||||||| ||||||||||| ||||||||||||| ||||| || |||||||||| |||||||||||| ||  ||||| |||||| | || |||||||||    
T  8861950 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccaatacgggtatcggaaaaatatcgggca 8862047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 9150048 - 9150003
Alignment:
Q  559 actatgtttctcttctctctaatgttatgtttcttttgttcatctc 604  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||    
T  9150048 actatgtttctcttctctctaatgctatgtttcttgtgttcttctc 9150003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 11382423 - 11382488
Alignment:
Q  193 cccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatac 258  Q
    |||||||||| ||||||||||||| ||||| || |||||||||| |||| ||||||| || |||||    
T  11382423 cccgatactccaaaaatggtgaagtatcgtatcagacacgtatccgatatcgatacgccccgatac 11382488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 11382565 - 11382599
Alignment:
Q  244 gatacgtcctgatacgcgtatcgaagaagtatcgg 278  Q
    ||||||||| |||||||||||||||||||||||||    
T  11382565 gatacgtcccgatacgcgtatcgaagaagtatcgg 11382599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 8862077 - 8862114
Alignment:
Q  241 accgatacgtcctgatacgcgtatcgaagaagtatcgg 278  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  8862077 accgatacgtcccgatacgcgtatcggagaagtatcgg 8862114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 21112008 - 21112064
Alignment:
Q  193 cccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    |||||||||| ||||||||||||| ||||| || || ||||||| |||| |||||||    
T  21112008 cccgatactccaaaaatggtgaagtatcgtatccgatacgtatcggatatcgatacg 21112064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 441 - 598
Target Start/End: Original strand, 21076155 - 21076312
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| | ||||||||        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  21076155 caagtctggcagcgctatcaaaatcatattgtcttttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 21076254  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttgtt 598  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  21076255 taccactgattgaattctactctgtttctcttctctctaatgttatgtttcttatgtt 21076312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 441 - 598
Target Start/End: Original strand, 20289525 - 20289682
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| | ||||||||        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  20289525 caagtctggcagcgctatcaaaatcatattgtcttttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 20289624  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttgtt 598  Q
    || |||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  20289625 taacactaattgaattctactctgtttctcttctctctaatgttatgtttcttatgtt 20289682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 442 - 604
Target Start/End: Complemental strand, 3046688 - 3046526
Alignment:
Q  442 aagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccatt 541  Q
    |||| ||||||| |||||||||||||||||| |||||||||||       |||||||||||||||||||||| |||||  |||||||||||| |||||||    
T  3046688 aagtttggcagcgctatcaaaaacatattgtctcttctaacccaaaaaaatagggtttctcgtcaccacataacgataactattccctcttctaaccatt 3046589  T
Q  542 accacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttgttcatctc 604  Q
    |||||  ||||||||| ||||||||||||||  ||||||||  |||||||||| |||| ||||    
T  3046588 accaccaattgaattctactatgtttctctttgctctaatgccatgtttctttggttcttctc 3046526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 441 - 590
Target Start/End: Complemental strand, 17631055 - 17630906
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||        |||||||||||||||||| ||||| |||| ||||| |||||| ||||||    
T  17631055 caagtctggcaacgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccaaatagcaatagctattctctcttctaaccat 17630956  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgttt 590  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  17630955 taccactgattgaattctactctgtttctcttctctctaatgttatgttt 17630906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 17068360 - 17068512
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||| ||||| ||||||||| |||||| | ||||||||||        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  17068360 caagtctcgcagcgctatcaaaatcatattatctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 17068459  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||  ||| |||||||||||||||||||||||||||||||    
T  17068460 taccactgattgaattttactctgtttctcttctctctaatgttatgtttctt 17068512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 441 - 593
Target Start/End: Complemental strand, 17579913 - 17579761
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||| ||||| ||||||||| |||||| | ||||||||||        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  17579913 caagtctcgcagcgctatcaaaatcatattatctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 17579814  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||  ||| |||||||||||||||||||||||||||||||    
T  17579813 taccactgattgaattttactctgtttctcttctctctaatgttatgtttctt 17579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 29054747 - 29054900
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcga--tagttattccctcttccaacc 538  Q
    ||||| |||||||  |||||||| |||||||| ||||||||||        |||||||||||||||||||||||| |  ||| ||||| |||||| ||||    
T  29054747 caagtttggcagcgttatcaaaatcatattgtctcttctaacc-taaaaaatagggtttctcgtcaccacatagcaaaatagctattctctcttctaacc 29054845  T
Q  539 attaccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  29054846 attaccactgattgaattctactatgtttctcttctctctaatgttatgtttctt 29054900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 492 - 590
Target Start/End: Complemental strand, 34964590 - 34964492
Alignment:
Q  492 tagggtttctcgtcaccacatagcgatagttattccctcttccaaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgttt 590  Q
    ||||||||||||||||| |||||| |||| ||||| |||||| ||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||    
T  34964590 tagggtttctcgtcaccgcatagcaatagctattctctcttctaaccattacctttgattgaattctactatgtttctcttctctctaatgttatgttt 34964492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 444 - 569
Target Start/End: Complemental strand, 10861674 - 10861549
Alignment:
Q  444 gtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccattac 543  Q
    |||||||||| || |||||| |||||| | ||||||||||        |||||||||||||||||||||||| |||| ||||| |||||| |||||||||    
T  10861674 gtctggcagcgctctcaaaatcatattctctcttctaacctaaaaatatagggtttctcgtcaccacatagcaatagctattctctcttctaaccattac 10861575  T
Q  544 cacttattgaattcgactatgtttct 569  Q
    |||| ||||||||| |||||||||||    
T  10861574 cactgattgaattctactatgtttct 10861549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 20289270 - 20289367
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    ||||||| ||||||||||| ||||||||||||| ||||| || |||||||||| ||||||||||||||| ||||||  ||||| | ||||||||||||    
T  20289270 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatcggataccgatacgtcccgatacggctatcggaaaagtatcgggca 20289367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 21075900 - 21075997
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    ||||||| ||||||||||| ||||||||||||| ||||| || |||||||||| ||||||||||||||| ||||||  ||||| | ||||||||||||    
T  21075900 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatcggataccgatacgtcccgatacggctatcggaaaagtatcgggca 21075997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 3046922 - 3046847
Alignment:
Q  205 aaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    |||||||||||||||| |||| ||||||||| |||||| ||||||||| |||||| |||||| |||||||| |||||    
T  3046922 aaaatggtgaagaatcatgtccgacacgtat-tgatactgatacgtcccgatacgtgtatcggagaagtattgggca 3046847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 3046795 - 3046729
Alignment:
Q  336 taacttgtactccgacatggctaacttgtactccgacaccgatagttttgtcttacatatttccttt 402  Q
    |||||||||||||||||  ||||| || ||||||||||||||||  | |||||||||||||||||||    
T  3046795 taacttgtactccgacacagctaatttatactccgacaccgatacctctgtcttacatatttccttt 3046729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 17068098 - 17068160
Alignment:
Q  187 tgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    |||| ||||||||||| ||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  17068098 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccaatacg 17068160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 17580259 - 17580197
Alignment:
Q  187 tgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    |||| ||||||||||| ||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  17580259 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccaatacg 17580197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 10861952 - 10861855
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    ||||||| ||||||||||| ||||||||||||| |||||  | ||||| |||| ||||||||||| | | |||||| |||||| | |||||| |||||    
T  10861952 ctctgaagccccgatactccaaaaatggtgaagtatcgtaaccgacacatatccgataccgatacattccgatacgggtatcggaaaagtattgggca 10861855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 10786928 - 10786875
Alignment:
Q  192 ccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccga 245  Q
    ||||||||||| ||||||||||||| ||||| || |||||||||| ||||||||    
T  10786928 ccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccga 10786875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 29054461 - 29054520
Alignment:
Q  183 gctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgatac 242  Q
    ||||| || ||||||||||| ||||||||||||| ||||| || |||||||||| |||||    
T  29054461 gctctcaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgatac 29054520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 17631277 - 17631223
Alignment:
Q  227 gacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    |||||||||| ||||||||||||||| |||||| |||||| | ||||||| ||||    
T  17631277 gacacgtatccgataccgatacgtcccgatacgggtatcggaaaagtatcaggca 17631223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 54260310 - 54260462
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||        |||| ||||||||||||||||||| |||| ||||| |||||| ||||||    
T  54260310 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaataggttttctcgtcaccacatagcaatagctattctctcttctaaccat 54260409  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  54260410 taccactgattgaattctactctgtttctcttctctctaatgttatgtttctt 54260462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 32760428 - 32760484
Alignment:
Q  194 ccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgt 250  Q
    ||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||    
T  32760428 ccgatacttcaaaaatggtgaagaatcgtgtccaacacgtatctgataccgatacgt 32760484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 563407 - 563350
Alignment:
Q  192 ccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    ||||||||||| |||||| | |||||||||| |||||||| |||| ||||||||||||    
T  563407 ccccgatactccaaaaatcgcgaagaatcgtatctgacacatatccgataccgatacg 563350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 26261273 - 26261323
Alignment:
Q  496 gtttctcgtcaccacatagcgatagttattccctcttccaaccattaccac 546  Q
    |||||||||||||||  ||| |||| |||||||||||| ||||||||||||    
T  26261273 gtttctcgtcaccaccgagctatagctattccctcttctaaccattaccac 26261323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 54260055 - 54260100
Alignment:
Q  183 gctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctga 228  Q
    |||||||| ||||||||||| ||||||||||||| ||||| |||||    
T  54260055 gctctgaagccccgatactccaaaaatggtgaagtatcgtatctga 54260100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 54432626 - 54432671
Alignment:
Q  231 cgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatc 276  Q
    |||||| ||||||||||||||| |||||||||||  ||||||||||    
T  54432626 cgtatccgataccgatacgtcccgatacgcgtataaaagaagtatc 54432671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 442 - 593
Target Start/End: Original strand, 14811462 - 14811613
Alignment:
Q  442 aagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccatt 541  Q
    ||||||||||||||||| |||| |||||||| ||||||||||        |||| ||||||||||||||||||| |||| ||||| |||||| |||||||    
T  14811462 aagtctggcagcactattaaaatcatattgtctcttctaacctaaaaaaataggatttctcgtcaccacatagcaatagctattctctcttctaaccatt 14811561  T
Q  542 accacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    |||||| ||||||||| ||| | |||||||||||||||||||||||||||||    
T  14811562 accactgattgaattctactctatttctcttctctctaatgttatgtttctt 14811613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 441 - 594
Target Start/End: Complemental strand, 14314286 - 14314126
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatag-------ttattccctcttc 533  Q
    |||||||||| || ||||||||| |||||||| ||||||||||        |||||||||||||||||||||||| ||||       |||||| ||||||    
T  14314286 caagtctggctgcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagccaatagttattctctcttc 14314187  T
Q  534 caaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttcttt 594  Q
     ||||||||||  | ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  14314186 taaccattaccggtgattgaattctactttgtttctcttctctctaatgttatgtttcttt 14314126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 27709994 - 27709936
Alignment:
Q  192 ccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgt 250  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  27709994 ccccgatactccaaaaatggtgaagaatcgtgtctgacacgtatccgataccgatacgt 27709936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 13043666 - 13043614
Alignment:
Q  552 gaattcgactatgtttctcttctctctaatgttatgtttcttttgttcatctc 604  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  13043666 gaattctactatgtttctcttctctctaatgttatgtttcttctgttcttctc 13043614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 449 - 546
Target Start/End: Original strand, 29081109 - 29081206
Alignment:
Q  449 gcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccattaccac 546  Q
    ||||| |||| ||||||||||||| |||||||| ||       ||||||| |||||||||||  ||| ||||||||||||||||| ||||||||||||    
T  29081109 gcagcgctatgaaaaacatattgtctcttctaatcccagaaaatagggttcctcgtcaccaccgagcaatagttattccctcttctaaccattaccac 29081206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 14314553 - 14314486
Alignment:
Q  192 ccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacg 259  Q
    ||||||||||| ||||||||||||| ||||| || |||||||||| |||||||||||| || ||||||    
T  14314553 ccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccgatacg 14314486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 32751174 - 32751106
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcc 252  Q
    ||||||| | ||||||||| ||||||||||||||||  | || |||||||||| |||||||||||||||    
T  32751174 ctctgaagctccgatactccaaaaatggtgaagaattatatccgacacgtatccgataccgatacgtcc 32751106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 14811175 - 14811250
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacg 259  Q
    ||||||| |||||| |||  ||||||||||||| ||||| || |||||||||| |||||||||||| || ||||||    
T  14811175 ctctgaagccccgacacttcaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccgatacg 14811250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 542
Target Start/End: Complemental strand, 13043822 - 13043727
Alignment:
Q  448 ggcagcactatcaaaaacatattgtttcttctaa-cccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccatta 542  Q
    ||||||||||| ||||||||||||| |||||||| |||       ||||||| ||||||||| |  ||||||||||||||||| ||| ||||||||    
T  13043822 ggcagcactatgaaaaacatattgtctcttctaacccccaaaaactagggttcctcgtcaccgctaagcgatagttattcccttttctaaccatta 13043727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 29080874 - 29080918
Alignment:
Q  204 aaaaatggtgaagaatcgtgtctgacacgtatctgataccgatac 248  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||    
T  29080874 aaaaatagtgaagaatcgtgtctgacacatatctgataccaatac 29080918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 441 - 593
Target Start/End: Complemental strand, 37943 - 37791
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| |||| |||||        |||||||||||||||||||||||| |||| ||||  |||||| ||||||    
T  37943 caagtctggcagcgctatcaaaatcatattgtctcttttaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattttctcttctaaccat 37844  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    |||| || ||||||||| ||| |||||||||||||||||||||||||||||||    
T  37843 taccgctgattgaattctactctgtttctcttctctctaatgttatgtttctt 37791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 38225 - 38153
Alignment:
Q  187 tgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacg 259  Q
    |||| ||||||||||| ||||||| ||||| ||||| || ||||||||||||||||||||||| || ||||||    
T  38225 tgaagccccgatactccaaaaatgatgaagtatcgtatccgacacgtatctgataccgatacgccccgatacg 38153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 496 - 593
Target Start/End: Complemental strand, 40819768 - 40819671
Alignment:
Q  496 gtttctcgtcaccacatagcgatagttattccctcttccaaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    |||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  40819768 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccacttattgaattctactctgtttctcttctctctaatgttatgtttctt 40819671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 441 - 593
Target Start/End: Complemental strand, 19928144 - 19927994
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| ||||  || ||||||||||        || ||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  19928144 caagtctggcagcgctatcaaaatcata--gtctcttctaacctaaaaaaatatggtttctcgtcaccacatagcaatagctattctctcttctaaccat 19928047  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  19928046 taccactgattgaattctactctgtttctcttctctctaatgttatgtttctt 19927994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 25443783 - 25443935
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||||||||||||||         |||||||||| |||||||||| | |||| ||||| || ||| ||||||    
T  25443783 caagtctggcagcgctatcaaaatcatattgtttcttctaacctaaaaaataagggtttctcatcaccacatatcaatagctattctcttttctaaccat 25443882  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||  ||||||||| ||| |||||||||||||||||||||||||||||||    
T  25443883 taccacagattgaattctactctgtttctcttctctctaatgttatgtttctt 25443935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 441 - 593
Target Start/End: Original strand, 30947745 - 30947896
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccat 540  Q
    ||||||||||||| ||||||||| |||||||| |||||||| |        |||||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  30947745 caagtctggcagcgctatcaaaatcatattgtctcttctaatctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 30947844  T
Q  541 taccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||  ||||||||| |||||||||||||||||||  ||||||||||||||    
T  30947845 taccaccgattgaattctactatgtttctcttctctc-gatgttatgtttctt 30947896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 37245444 - 37245346
Alignment:
Q  183 gctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    |||||||| ||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  37245444 gctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatctgataccgatacgtcctgatacgggtatcggaaaagtatcgggca 37245346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 497 - 593
Target Start/End: Complemental strand, 26279781 - 26279685
Alignment:
Q  497 tttctcgtcaccacatagcgatagttattccctcttccaaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    ||||||||||||||||| | |||| ||||| |||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  26279781 tttctcgtcaccacataacaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttctt 26279685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 438 - 604
Target Start/End: Original strand, 45280929 - 45281096
Alignment:
Q  438 ctacaagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnn-tagggtttctcgtcaccacatagcgatagttattccctcttccaa 536  Q
    ||||||||||||| || | || ||||||||||||| |||||||||||        ||||||||||| |||||||| ||||||||||||||||||||| ||    
T  45280929 ctacaagtctggccgcgcaataaaaaacatattgtctcttctaacccaaaaaaaatagggtttctcatcaccacacagcgatagttattccctcttctaa 45281028  T
Q  537 ccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttgttcatctc 604  Q
    ||| || |||  |||| |||| ||||||||||||||  ||||||||| ||||||||| ||||| ||||    
T  45281029 ccaatatcaccaattgtattctactatgtttctctttgctctaatgtcatgtttcttctgttcttctc 45281096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 492 - 604
Target Start/End: Original strand, 22293075 - 22293187
Alignment:
Q  492 tagggtttctcgtcaccacatagcgatagttattccctcttccaaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttc 591  Q
    |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||  ||  ||||| |||||||||||||||||||||||  ||||||||    
T  22293075 tagggtttctcgtcaccatataacgatagttattccctcttctaaccattaccaccgatcaaattctactatgtttctcttctctctaatactatgtttc 22293174  T
Q  592 ttttgttcatctc 604  Q
     | ||||| ||||    
T  22293175 ctctgttcttctc 22293187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 22205470 - 22205372
Alignment:
Q  183 gctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    ||||| || ||||||||||| |||||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||||||| | ||||||||||||    
T  22205470 gctctaaagccccgatactccaaaaatggtgaagaatcgtgtccgatacgtatccgataccgatacgttccgatacgcgtatcggaaaagtatcgggca 22205372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 22229269 - 22229367
Alignment:
Q  183 gctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    ||||| || ||||||||||| |||||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||||||| | ||||||||||||    
T  22229269 gctctaaagccccgatactccaaaaatggtgaagaatcgtgtccgatacgtatccgataccgatacgttccgatacgcgtatcggaaaagtatcgggca 22229367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 438 - 557
Target Start/End: Complemental strand, 22205227 - 22205108
Alignment:
Q  438 ctacaagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaac 537  Q
    |||| |||||| ||||||||| |||||||| |||| ||||||| |||       |||||||||||||||||| |||||||||| |||||||||||| |||    
T  22205227 ctaccagtctgccagcactataaaaaacattttgtctcttctatcccaaaaaaatagggtttctcgtcaccaaatagcgatagctattccctcttctaac 22205128  T
Q  538 cattaccacttattgaattc 557  Q
    ||||||| |  |||||||||    
T  22205127 cattaccgccgattgaattc 22205108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 438 - 557
Target Start/End: Original strand, 22229512 - 22229631
Alignment:
Q  438 ctacaagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaac 537  Q
    |||| |||||| ||||||||| |||||||| |||| ||||||| |||       |||||||||||||||||| |||||||||| |||||||||||| |||    
T  22229512 ctaccagtctgccagcactataaaaaacattttgtctcttctatcccaaaaaaatagggtttctcgtcaccaaatagcgatagctattccctcttctaac 22229611  T
Q  538 cattaccacttattgaattc 557  Q
    ||||||| |  |||||||||    
T  22229612 cattaccgccgattgaattc 22229631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 36281529 - 36281615
Alignment:
Q  193 cccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcggg 279  Q
    |||||||||| |||||||  |||||||||||||||||| ||||||||||| ||||||||| |||||||||||   ||||||||||||    
T  36281529 cccgatactccaaaaatgacgaagaatcgtgtctgacatgtatctgatactgatacgtcccgatacgcgtataagagaagtatcggg 36281615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 40820071 - 40819974
Alignment:
Q  182 ggctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcggg 279  Q
    |||||| || ||||||||||| ||||||||||||| ||||| || |||||||||  ||||||||||||||| |||||| |||||| | ||||||||||    
T  40820071 ggctctaaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatgcgataccgatacgtcccgatacgggtatcggaaaagtatcggg 40819974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 22205314 - 22205248
Alignment:
Q  336 taacttgtactccgacatggctaacttgtactccgacaccgatagttttgtcttacatatttccttt 402  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||| || |||||||||||||||||||    
T  22205314 taacttgtactccgacacggctaacttatacttcgacaccgatacttctgtcttacatatttccttt 22205248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 22229425 - 22229491
Alignment:
Q  336 taacttgtactccgacatggctaacttgtactccgacaccgatagttttgtcttacatatttccttt 402  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||| || |||||||||||||||||||    
T  22229425 taacttgtactccgacacggctaacttatacttcgacaccgatacttctgtcttacatatttccttt 22229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 26279985 - 26279919
Alignment:
Q  181 tggctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgata 247  Q
    |||||||||| ||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||    
T  26279985 tggctctgaagccccgatactctaaaaatggtgaagtatcgtatccgacacgtatcagataccgata 26279919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 45280678 - 45280761
Alignment:
Q  195 cgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgg 278  Q
    |||||||  ||||||||||| ||||| |||| |||| ||||||||||||  ||||||| ||||||||||| | |||||||||||    
T  45280678 cgatacttcaaaaatggtgatgaatcctgtccgacatgtatctgataccattacgtcccgatacgcgtattggagaagtatcgg 45280761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 19928411 - 19928354
Alignment:
Q  192 ccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    ||||||||||| ||||||||||||| ||||| || |||||||||| ||||||||||||    
T  19928411 ccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacg 19928354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 25443519 - 25443584
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    ||||||| ||| ||||||| ||||||||||||| ||||| || |||||||||| ||||||||||||    
T  25443519 ctctgaagccctgatactcaaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacg 25443584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 515
Target Start/End: Complemental strand, 37243091 - 37243017
Alignment:
Q  441 caagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagc 515  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||        ||||||||||||||||||||||||    
T  37243091 caagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagc 37243017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 25556691 - 25556738
Alignment:
Q  232 gtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcggg 279  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||    
T  25556691 gtatctgataccgatacgtcctgatacgtgtatcagagaagtatcggg 25556738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 30947456 - 30947531
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacg 259  Q
    ||||||| ||||||||||  ||||||||||||| ||||| || |||||||||  |||||||||||| || ||||||    
T  30947456 ctctgaagccccgatactacaaaaatggtgaagtatcgtatccgacacgtattcgataccgatacgccccgatacg 30947531  T

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Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 15043266 - 15043197
Alignment:
Q  336 taacttgtactccgacatggctaacttgtactccgacaccgatagttttgtcttacatatttccttttaa 405  Q
    |||||| ||| |||| | ||||||||| |||||||| || |||| || ||||||||||||||||||||||    
T  15043266 taacttataccccgatacggctaacttatactccgatactgatacttctgtcttacatatttccttttaa 15043197  T

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Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 30947681 - 30947741
Alignment:
Q  315 tacgtgtcggatacagctaattaacttgtactccgacatggctaacttgtactccgacacc 375  Q
    ||||||||||||||  |||| |||||||||||||||||  ||| |||| ||||||||||||    
T  30947681 tacgtgtcggatacgactaactaacttgtactccgacacagcttacttatactccgacacc 30947741  T

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Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 554 - 593
Target Start/End: Original strand, 36630746 - 36630785
Alignment:
Q  554 attcgactatgtttctcttctctctaatgttatgtttctt 593  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  36630746 attctactatgtttctcttctttctaatgttatgtttctt 36630785  T

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Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 15043401 - 15043363
Alignment:
Q  187 tgaaaccccgatactctaaaaatggtgaagaatcgtgtc 225  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  15043401 tgaaaccccgatactccaaaaatggtgaagaaccgtgtc 15043363  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 26279831 - 26279791
Alignment:
Q  244 gatacgtcctgatacgcgtatcgaagaagtatcgggcagtt 284  Q
    ||||||||| ||||||||||||| |||||||||||| ||||    
T  26279831 gatacgtcccgatacgcgtatcggagaagtatcgggaagtt 26279791  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 40819928 - 40819888
Alignment:
Q  244 gatacgtcctgatacgcgtatcgaagaagtatcgggcagtt 284  Q
    ||||||||| ||||||||||||| ||||||||||| |||||    
T  40819928 gatacgtcccgatacgcgtatcggagaagtatcggacagtt 40819888  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 442 - 599
Target Start/End: Original strand, 33368964 - 33369117
Alignment:
Q  442 aagtctggcagcactatcaaaaacatattgtttcttctaacccnnnnnnntagggtttctcgtcaccacatagcgatagttattccctcttccaaccatt 541  Q
    ||||| |||| | |||||||||||||||| | |||||||||||       | ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  33368964 aagtccggcaccgctatcaaaaacatattatctcttctaacccaaaaaatt-gggtttctcgtcaccacatagcgatagctattccctcttctaaccatt 33369062  T
Q  542 accacttattgaattcgactatgtttctcttctctctaatgttatgtttcttttgttc 599  Q
    |||||| ||||||||| ||| ||||||   ||||||||||| |||||||||| |||||    
T  33369063 accactgattgaattctactctgtttc---tctctctaatgctatgtttcttctgttc 33369117  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 492 - 598
Target Start/End: Complemental strand, 46397936 - 46397832
Alignment:
Q  492 tagggtttctcgtcaccacatagcgatagttattccctcttccaaccattaccacttattgaattcgactatgtttctcttctctctaatgttatgtttc 591  Q
    |||||||||||||||||||||| | | |||||||| ||||||||| |||||||||  ||||||||| ||  |||||||||||||||||||||||||||||    
T  46397936 tagggtttctcgtcaccacatatcaacagttattctctcttccaatcattaccaccgattgaattctac--tgtttctcttctctctaatgttatgtttc 46397839  T
Q  592 ttttgtt 598  Q
    || ||||    
T  46397838 ttctgtt 46397832  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 29096170 - 29096261
Alignment:
Q  187 tgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgg 278  Q
    |||| ||||||||||  ||||||| ||||||||||||||| ||||||||| ||||| ||||||| | |||| |||||||| |||||||||||    
T  29096170 tgaagccccgatacttcaaaaatgatgaagaatcgtgtctaacacgtatccgatactgatacgttccgatatgcgtatcggagaagtatcgg 29096261  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 41430395 - 41430481
Alignment:
Q  198 tactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggcagtt 284  Q
    ||||| |||||||||||||||||||| ||||| ||||||  ||||||| ||| ||  |||||||||||| |||||||||||||||||    
T  41430395 tactccaaaaatggtgaagaatcgtgcctgacccgtatccaataccgaaacgccccaatacgcgtatcggagaagtatcgggcagtt 41430481  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 33368710 - 33368806
Alignment:
Q  184 ctctgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggca 281  Q
    ||||||| ||||||||||  |||| ||||||||||| ||||| ||| ||||||  ||||||||||||  |||||||||||||| ||||||||| ||||    
T  33368710 ctctgaagccccgatacttaaaaattggtgaagaattgtgtccgacgcgtatcc-ataccgatacgtattgatacgcgtatcggagaagtatcaggca 33368806  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 22150670 - 22150619
Alignment:
Q  354 ggctaacttgtactccgacaccgatagttttgtcttacatatttccttttaa 405  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  22150670 ggctaacttatactccgacaccgatacttctgtcttacatatttccttttaa 22150619  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 46398268 - 46398206
Alignment:
Q  187 tgaaaccccgatactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacg 249  Q
    |||| ||||||||||| |||||||||| || ||||| ||  ||||||||||||||||||||||    
T  46398268 tgaagccccgatactccaaaaatggtgtagtatcgtatccaacacgtatctgataccgatacg 46398206  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 22150792 - 22150724
Alignment:
Q  208 atggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatc 276  Q
    ||||| ||||| |||| |||||||||||||||||  ||||||| | |||||| ||||||  ||||||||    
T  22150792 atggttaagaaacgtgcctgacacgtatctgatattgatacgttccgatacgtgtatcggtgaagtatc 22150724  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 23206003 - 23205967
Alignment:
Q  563 tgtttctcttctctctaatgttatgtttcttttgttc 599  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  23206003 tgtttctcctctctctaatgctatgtttcttttgttc 23205967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 14488 - 14402
Alignment:
Q  198 tactctaaaaatggtgaagaatcgtgtctgacacgtatctgataccgatacgtcctgatacgcgtatcgaagaagtatcgggcagtt 284  Q
    ||||| |||||||||||||||||||| ||||| ||||||  ||||||||||| || ||||||||||||| |||||||||||||||||    
T  14488 tactccaaaaatggtgaagaatcgtgcctgacgcgtatccaataccgatacgccccgatacgcgtatcggagaagtatcgggcagtt 14402  T

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Target: scaffold0011 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 219739 - 219792
Alignment:
Q  17 aatgatatagtagtatattgatatagcacacttgccacatgctcgtaaatgata 70  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  219739 aatgatatagtaatatattgatatagcacacttgccacttgctcgtaaatgata 219792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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