View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1712_low_20 (Length: 340)
Name: NF1712_low_20
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 47564144 - 47564321
Alignment:
| Q |
12 |
cagagagatcaaatattaattaaccattcaatgtacaactgtaactgtaagcactatttctaccataatttacactcagaaaacatcctcatgagaatga |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47564144 |
cagaaagatcaaatattaattaaccattcaatgtacaactgtaactgtaagcactatttctaccataatttacactcagaaaacatcctcatgagaatga |
47564243 |
T |
|
| Q |
112 |
ttgaattttcaatctatctcaggaacttcaccaagaaaacattgacatataatttacacaactcctattcccaaaccc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47564244 |
ttgaattttcaatctatctcaggaacttcaccaagaaaacattgacatataatttacacaactcctattcccaaaccc |
47564321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 47564372 - 47564456
Alignment:
| Q |
240 |
ctaatatactactatcaaataatcttcaccagcttttttgttggcaatgttttccagatctcttatcacctctaggagaaagtaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47564372 |
ctaatatactactatcaaataatcttcaccagcttttttgttggcaatgttttccagatctcttatcacctctaggagaaagtaa |
47564456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University