View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1712_low_22 (Length: 315)
Name: NF1712_low_22
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 26738361 - 26738665
Alignment:
| Q |
8 |
agaagcaaaggatctggccaataaacgcttgaatctccagggccatcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctag |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26738361 |
agaaacaaaggatctggccaataaacgcttgaatctccagggccatcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctag |
26738460 |
T |
|
| Q |
108 |
aggaatagttggt---gtctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttg |
204 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26738461 |
aggaatagttggtggtgtctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttg |
26738560 |
T |
|
| Q |
205 |
ccacaaaatgaaaccatttgtgttatgttctctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtagac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26738561 |
ccacaaaatgaaaccatttgtgttatgttctctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtagac |
26738660 |
T |
|
| Q |
305 |
caaac |
309 |
Q |
| |
|
||||| |
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|
| T |
26738661 |
caaac |
26738665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 26715125 - 26715426
Alignment:
| Q |
8 |
agaagcaaaggatctggccaataaacgcttgaatctccagggccatcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctag |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26715125 |
agaaacaaaggatctggccaataaacgcttgaatctccagggccatcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctag |
26715224 |
T |
|
| Q |
108 |
aggaatagttggtgtctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttgcca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26715225 |
aggaatagttggtgtctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgcca |
26715324 |
T |
|
| Q |
208 |
caaaatgaaaccatttgtgttatgttctctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtagaccaa |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26715325 |
caaaatgaaaccatttttgttatgttctctgaaaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaa |
26715424 |
T |
|
| Q |
308 |
ac |
309 |
Q |
| |
|
|| |
|
|
| T |
26715425 |
ac |
26715426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 26693448 - 26693162
Alignment:
| Q |
23 |
ggccaataaacgcttgaatctccagggccatcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctagaggaatagttggtgt |
122 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||||| | ||||| ||||| || |||||||| ||||| ||| |||||||| ||| || |
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|
| T |
26693448 |
ggccaataaatacttgaaacttgagggccatcatagagaagacgcaagagattgtcgttatcgaagaaaagtttgtaaaagcccgaggaatatttgttgc |
26693349 |
T |
|
| Q |
123 |
ctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttgccacaaaatgaaaccatt |
222 |
Q |
| |
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| |||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |
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| T |
26693348 |
cacttttggaggaaacaagtttcatgtgccttgtgaaactttgatcaggaaggagggtatctgttggaaaatcaaagctttgccacaaaacgaaaccaat |
26693249 |
T |
|
| Q |
223 |
tgtgttatgttctctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtagaccaaac |
309 |
Q |
| |
|
| |||| || |||||||| | ||||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||| |||||||| |
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|
| T |
26693248 |
tttgttgtgctctctgaggacgagatttcctgtatcgtacaaaatcaactcaagtggtttggatgagttagtgtttgtggaccaaac |
26693162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 26676786 - 26677054
Alignment:
| Q |
15 |
aaggatctggccaataaacgcttgaatctccagggccatcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctagaggaata |
114 |
Q |
| |
|
||||||||||||| |||| || ||| || |||||||||||||||||||| | ||||||||| |||| || | |||||| ||| | | || ||||| |
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|
| T |
26676786 |
aaggatctggccagtaaatactagaaacttgagggccatcatagagaagacttaaaagattatcattgttgaaaagaagcttatagaaccctgatgaata |
26676885 |
T |
|
| Q |
115 |
gttggtgtctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttgccacaaaatg |
214 |
Q |
| |
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| |||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
26676886 |
tacgttgtcacttttcgaggaaacaagtttcatgtaccttgtgaaactttgatcaggaaggagggtatctgttggaaaatcaaagcttcgccacaaaatg |
26676985 |
T |
|
| Q |
215 |
aaaccatttgtgttatgttctctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttg |
283 |
Q |
| |
|
||||||||||| || |||||| ||||| || ||||| | ||||| |||| |||||||||| ||||| |
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|
| T |
26676986 |
aaaccatttgttttgcgttctcggagaacaaggtttcctatgtcgtataaaaacaactcaagtggtttg |
26677054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 26689273 - 26689036
Alignment:
| Q |
46 |
agggccatcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctagaggaatagttggtgtctcttttggacgaaacaaggttc |
145 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||| || | |||||| ||| | | || ||||| | |||| ||||| || |||||||| ||| |
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|
| T |
26689273 |
agggccatcatagagaagacttaaaagattatcattgttgaaaagaagcttatagaaccctgatgaatatacgttgtcacttttcgaggaaacaagtttc |
26689174 |
T |
|
| Q |
146 |
atgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttgccacaaaatgaaaccatttgtgttatgttctctgagaatga |
245 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||| ||||| | |
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|
| T |
26689173 |
atgtaccttgtgaaactttgatcaggaaggagggtatctgttggaaaatcaaagcttcgccacaaaatgaaaccatttgttttgcgttctcggagaacaa |
26689074 |
T |
|
| Q |
246 |
gatttcccgtatcgtacaaaaccaactcaagttgtttg |
283 |
Q |
| |
|
| ||||| | || || |||| |||||||||| ||||| |
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|
| T |
26689073 |
ggtttcctatgtcatataaaaacaactcaagtggtttg |
26689036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 277
Target Start/End: Original strand, 26700050 - 26700221
Alignment:
| Q |
106 |
agaggaatagttggtgtctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttgc |
205 |
Q |
| |
|
||||||||||||| || | ||| | |||||||||||||||||||||| || ||| |||||| |||||||| ||||||||||| ||||||||||||||| |
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|
| T |
26700050 |
agaggaatagttgttgacacttcttgacgaaacaaggttcatgtacccagtcaaatcttgatcaggaaggagagtatctgttgggaaatcaaaactttgc |
26700149 |
T |
|
| Q |
206 |
cacaaaatgaaaccatttgtgttatgttctctgagaatgagatttcccgtatcgtacaaaaccaactcaagt |
277 |
Q |
| |
|
||||||| |||||||||| ||| |||||||| |||| ||| ||||| || |||||||||| ||||| |||| |
|
|
| T |
26700150 |
cacaaaacgaaaccatttatgtcttgttctctcagaacgaggtttcctgtttcgtacaaaaacaactgaagt |
26700221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 309
Target Start/End: Original strand, 26745409 - 26745700
Alignment:
| Q |
21 |
ctggccaataaacgcttgaatctccagggccatcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctagaggaatagttggt |
120 |
Q |
| |
|
||||||| ||||| |||||| || ||| ||||| |||| ||||| ||||||||| |||| || || |||||||||||| ||| ||| ||||||| | |
|
|
| T |
26745409 |
ctggccagtaaactcttgaaacttgaggtccatcgtagataagacagagaagattgtcgtagttgaataaaagcttgtagaagccagatgaatagtcatt |
26745508 |
T |
|
| Q |
121 |
gtctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttgccac---aaaatgaaa |
217 |
Q |
| |
|
| ||||| || |||| || | |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |||||| ||| || || |
|
|
| T |
26745509 |
cttgctttttgaggaaatgagttgcatgtaccttgtgaaactttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaa |
26745608 |
T |
|
| Q |
218 |
ccatttgtgttatgttctctgagaatgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtagaccaaac |
309 |
Q |
| |
|
|| | ||||| ||||||| |||||||||||||| || ||| |||||| ||||||||||| |||| ||||| |||||||| |||||||| |
|
|
| T |
26745609 |
acaatagtgttgtgttctcgaagaatgagatttcctgtgtcgcacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaac |
26745700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 89 - 277
Target Start/End: Original strand, 26735190 - 26735378
Alignment:
| Q |
89 |
aaaagcttgtagcagctagaggaatagttggtgtctcttttggacgaaacaaggttcatgtaccttgtgaaactttgatcgggaaggagggtatctgttg |
188 |
Q |
| |
|
|||||||||||| | | ||||||||||||| || | ||||| ||||||||||||||||| || | || ||||||| |||||||| |||||||||| |
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|
| T |
26735190 |
aaaagcttgtaggaaccagaggaatagttgttgacacttttcaacgaaacaaggttcatgaactcaatcaatttttgatcaggaaggagagtatctgttg |
26735289 |
T |
|
| Q |
189 |
gaaaatcaaaactttgccacaaaatgaaaccatttgtgttatgttctctgagaatgagatttcccgtatcgtacaaaaccaactcaagt |
277 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||| ||| |||||||| |||| ||| ||||| || |||||||||| ||||| |||| |
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|
| T |
26735290 |
ggaaatcaaaactttgccacaaaacgaaaccatttatgtcttgttctctcagaacgaggtttcctgtttcgtacaaaaacaactgaagt |
26735378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 21097332 - 21097288
Alignment:
| Q |
170 |
ggaaggagggtatctgttggaaaatcaaaactttgccacaaaatg |
214 |
Q |
| |
|
|||||||| |||||||||||| | |||||||| |||||||||||| |
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|
| T |
21097332 |
ggaaggagagtatctgttggagagtcaaaactctgccacaaaatg |
21097288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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