View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_23 (Length: 306)
Name: NF1712_low_23
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_23 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 7420504 - 7420210
Alignment:
| Q |
9 |
gagaagaaatgaattaaaaaattgattggttattcaaattttctttggatatattaaacaccagagaatggaaattgattggtttcatttgatgtgagac |
108 |
Q |
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| T |
7420504 |
gagaagaaatgaattaaaaaattgattggttattcaaattttctttcgatatattaaacaccagagaatggaaattgattggtttcatttgatgtgagac |
7420405 |
T |
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| Q |
109 |
gtgaagttgtttttacaacgctcataacctgagacatggatgatagttttgatcttagattgatcctaggacatttggtgatcttatttatttaattaat |
208 |
Q |
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| T |
7420404 |
gtgaagttttttttacaacgctcataacctgagacatggatgatagttttgatcttagattgatcctaggacatttggtgatcttatttatttaat---- |
7420309 |
T |
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| Q |
209 |
taatggttc-aannnnnnnnnnnatctcatatttggaaacaattattttccacgtgcaaaattttgttaaattagtgtgaataaatcatagactaaact |
306 |
Q |
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| T |
7420308 |
taatggttcaaatttttttttttatctcatatttggaaacaattattttccacgtgcaaaattttgttaaattagtgtgaataaatcatagactaaact |
7420210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 7501163 - 7501088
Alignment:
| Q |
15 |
aaatgaattaaaaaattgattggttattcaaattttctttggatatattaaacaccagagaatggaaattgattgg |
90 |
Q |
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| T |
7501163 |
aaatgaattaaaaaaattattggttattcaaattttctttgcatatattaaacaccagaaaatggtaatttattgg |
7501088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 7428182 - 7428120
Alignment:
| Q |
9 |
gagaagaaatgaattaaaaaattgattggttattcaaattttctttggatatattaaacaccaga |
73 |
Q |
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| T |
7428182 |
gagaagaaatggat--aaaaattgattggtctttgaaattttctttgaatatattaaactccaga |
7428120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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