View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_25 (Length: 287)
Name: NF1712_low_25
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 2835252 - 2835509
Alignment:
| Q |
11 |
cagagagtgtaacaacatcatggatgaagaaaaggttctttgtagaaaccttagttaatgttctaccaccagagaaagattcaattccatgtaactttct |
110 |
Q |
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| T |
2835252 |
cagagagtgtaacaacatcatggatgaagaaaaggttctttgtagaaaccttagttaatgttctaccaccagagaaagattcaattccatgtaactttct |
2835351 |
T |
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| Q |
111 |
ccttaggctattgagaacagctaacatggtaggtgttgatggaagctatagacaagagctagagaagagaatttcatggcagttagatcaagcttgtttg |
210 |
Q |
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| T |
2835352 |
ccttaggctattgagaacagctaacatggtaggtgttgatggaagctatagacaagagctagagaagagaatttcatggcagttagatcaagcttgtttg |
2835451 |
T |
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| Q |
211 |
aaagaacttgttattccttcttttagtcacacttgtgggacacttttggattttgagc |
268 |
Q |
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| T |
2835452 |
aaagaacttgttattccttcttttagtcacacttgtgggacacttttggattttgagc |
2835509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 44265710 - 44265458
Alignment:
| Q |
16 |
agtgtaacaacatcatggatgaagaaaaggttctttgtagaaaccttagttaatgttctaccaccagagaaagattcaattccatgtaactttctcctta |
115 |
Q |
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| T |
44265710 |
agtgtaacaacatcatggatgaagaaaaggttctttgttgaaaccttagtcagtgttcttccaccagacaaagattccattccatgcaacttcctccttc |
44265611 |
T |
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| Q |
116 |
ggctattgagaacagctaacatggtaggtgttgatggaagctatagacaagagctagagaagagaatttcatggcagttagatcaagcttgtttgaaaga |
215 |
Q |
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| T |
44265610 |
gccttcttaaaacagcaaacatggttcttgtcgagtctacttatcgaaccgatcttgagaatcgaatttcatggcagttagatcaagcttcattgaaaga |
44265511 |
T |
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| Q |
216 |
acttgttattccttcttttagtcacacttgtgggacacttttggattttgagc |
268 |
Q |
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| T |
44265510 |
actcatgataccttctttcagtcatacttgtgggacccttttggatgttgagc |
44265458 |
T |
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