View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_3 (Length: 581)
Name: NF1712_low_3
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 330 - 563
Target Start/End: Original strand, 28865150 - 28865380
Alignment:
| Q |
330 |
gcacataccgtatcaaagcataaatgtaaacgccgtcctatactttgctttcttacctgtaacgcgtttatccaacacgtcaaatagaatttttccattt |
429 |
Q |
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| T |
28865150 |
gcacataccgtatcaa-gcattaatgtaaacgccgtcctatactttgctttcttacctgtaacgcgtttatccaacacgtcaaatagaatttttccattt |
28865248 |
T |
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| Q |
430 |
gcattaaggaaccatatagtatatatatacacatttttgcttccata-ttttcaatcacataactaccaattccataatcttctttcttttccttcaaca |
528 |
Q |
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| T |
28865249 |
gcattaaggaaccatatag--tatatatacacatttttgcttccatatttttcaatcacataacta-caattccataatcttctttcttttccttcaaaa |
28865345 |
T |
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| Q |
529 |
actctttgataattttaacttcatcacatcactat |
563 |
Q |
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| T |
28865346 |
actctttgataattttaacttcataacatcactat |
28865380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 28864801 - 28865085
Alignment:
| Q |
1 |
taacaaaaatgcatatttagagactactttatatttaatattgaatcatgactattgtggcagcgaggtgcgtat----------caaaatgactattta |
90 |
Q |
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| T |
28864801 |
taacaaaagtgcatattcagagactactttgtatttaatattgaatcaggacttttgtgacagcgaggtgcgtataatcaggtatcaaaatgactattta |
28864900 |
T |
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| Q |
91 |
ctcttgtatataagaagagagagttcttccacttctacatacaacttctctcaatagtcaattggtatt-------ttctttgcagagaccaactatttt |
183 |
Q |
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| T |
28864901 |
ctcttgtatataagaagagagagttcttctacttctacatacaacttctctcaatagtcaattggtattcttttttttttttgcagagaccaactatttt |
28865000 |
T |
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| Q |
184 |
tactcattcttgttgggtggacaaatataactacgagttgacgaaacaatatagactagaaagacatgaatgtttggaagcatac |
268 |
Q |
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| T |
28865001 |
tactcattcttgttgggtggacaaatatgactacgagttgaagaaacaatatagtctagaaagacatgaatgtttggaagcatac |
28865085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 510
Target Start/End: Complemental strand, 18617157 - 18617098
Alignment:
| Q |
451 |
tatatatacacatttttgcttccatattttcaatcacataactaccaattccataatctt |
510 |
Q |
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| T |
18617157 |
tatatatacacttttttccttctatattttcaaccacattactaccaattccatcatctt |
18617098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 30360495 - 30360536
Alignment:
| Q |
7 |
aaatgcatatttagagactactttatatttaatattgaatca |
48 |
Q |
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| T |
30360495 |
aaatgcacatttagagactactttatatttaacattgaatca |
30360536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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