View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1712_low_37 (Length: 250)
Name: NF1712_low_37
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 22132001 - 22131766
Alignment:
| Q |
1 |
aaaggaataccaatattcttgctacataacaaattcactgtgtttattgtgtcagatgcaatagccttcttttgttcaatggcttctcttatgatgtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
22132001 |
aaaggaataccaatattcttgctacataacaaattcactgtgtttattgtgtcagatgcaatagccttcttttgttcaatggcttctcttatgaagcttt |
22131902 |
T |
|
| Q |
101 |
taccaaagacnnnnnnnggacccatcaacgaagaaggtattcaaactgtatttactattattgacttaaggataggtttgtattatttgcttgttgcctt |
200 |
Q |
| |
|
| ||| |||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22131901 |
tgccacagacaaaa---gggcccatcaacgaagaaggtattcgaactgtatttactatta---acttaaggataggtttgtattatttgcttgttgcctt |
22131808 |
T |
|
| Q |
201 |
agtggcaacaacgatagcgtttagtgcagctctgcctatgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22131807 |
agtggcaacaacgatagcgtttagtgcagctctgtctatgct |
22131766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 18948802 - 18949037
Alignment:
| Q |
1 |
aaaggaataccaatattcttgctacataacaaattcactgtgtttattgtgtcagatgcaatagccttcttttgttcaatggcttctcttatgatgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
18948802 |
aaaggaataccaatattcttgctacataaaaaattcactgtgtttattgtgtcagatgcaatagccttctattgttcaatggcttctcttatgaatcttt |
18948901 |
T |
|
| Q |
101 |
taccaaagacnnnnnnnggacccatcaacgaagaaggtattcaaactgtatttactattattgacttaaggataggtttgtattatttgcttgttgcctt |
200 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||| | || ||||| || |||| | | |||||||||||||||||| ||||||| |
|
|
| T |
18948902 |
taccagagac---aaaaggacccatcaacgaagaaggtattcaaactgaacttgttatta--ga-ttaaagctcggtttgtattatttgcttattgcctt |
18948995 |
T |
|
| Q |
201 |
agtggcaacaacgatagcgtttagtgcagctctgcctatgct |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
18948996 |
agtggcaacaacgatagcgtttgctgcagctctgtctatgct |
18949037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 21961331 - 21961225
Alignment:
| Q |
1 |
aaaggaataccaatattcttgctacataacaaattcactgtgtttattgtgtcagatgcaatagccttcttttgttcaatggcttctcttatgatgtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| | |||||||||| ||||||| |||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
21961331 |
aaaggaataccaatattcttgctacaaaaaaaattcgatctgtttattgtatcagatgtaatagccttcttttattcaatgggttctcttttgatgtttt |
21961232 |
T |
|
| Q |
101 |
taccaaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
21961231 |
taccaaa |
21961225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 21961163 - 21961096
Alignment:
| Q |
175 |
ggtttgtattatttgcttgttgccttagtggcaacaacgatagcgtttagtgcagctctgcctatgct |
242 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
21961163 |
ggtttgtattttttgctttttgccttagtggcaacaacgatagcctttactgcagctctgtctatgct |
21961096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 21743199 - 21743098
Alignment:
| Q |
1 |
aaaggaataccaatattcttgctacataacaaattcactgtgtttattgtgtcagatgcaatagccttcttttgttcaatggcttctcttatgatgtttt |
100 |
Q |
| |
|
||||||||||||||||||||| | | || | ||||| | |||||||||||||||||| ||||||| |||| ||||||| ||||||| ||||||||| |
|
|
| T |
21743199 |
aaaggaataccaatattcttgtcagacaagacattcatgttatttattgtgtcagatgcactagccttgttttcctcaatggtttctcttctgatgtttt |
21743100 |
T |
|
| Q |
101 |
ta |
102 |
Q |
| |
|
|| |
|
|
| T |
21743099 |
ta |
21743098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39752023 - 39752121
Alignment:
| Q |
1 |
aaaggaataccaatattcttgctacataacaaattcactgtgtttattgtgtcagatgcaatagccttcttttgttcaatggcttctcttatgatgttt |
99 |
Q |
| |
|
||||||||||||||||||||| | | |||| ||||| || ||| |||||||||||||| ||||||| |||| ||||||||||||||| | |||||| |
|
|
| T |
39752023 |
aaaggaataccaatattcttgtcagacaacacattcatggtatttgttgtgtcagatgcactagccttattttcctcaatggcttctcttctaatgttt |
39752121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University