View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_38 (Length: 250)
Name: NF1712_low_38
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 8385183 - 8385005
Alignment:
| Q |
1 |
ttaatagttagtttgttcacattatctacttttcactcaaatcatttatgacttataaacgttgataggtagacagatattccaccatactggaatgaaa |
100 |
Q |
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| T |
8385183 |
ttaatagttagtttgttcacattatttacttttcactcaaatcatttatgacttataaacgttgataggtagacagatattcaaccattctggaatgaaa |
8385084 |
T |
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| Q |
101 |
tataagcaaaaaattacgtatatctaggccaaaagtacatgtatttggtcataggtcacatttagaccagatacatgta |
179 |
Q |
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| T |
8385083 |
tataagcaaaaaattacgtacatctagaccaaaagtacatgtatttggtcataggtcacatttagatcagatacatgta |
8385005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 8384959 - 8384909
Alignment:
| Q |
190 |
ttatattttgttacagagggagtagttttagtctctaatcaattgtctgtg |
240 |
Q |
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| T |
8384959 |
ttatattttgttacagagggagtagttttagtctctcatcaattgtctgtg |
8384909 |
T |
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