View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_40 (Length: 246)
Name: NF1712_low_40
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12355516 - 12355746
Alignment:
| Q |
1 |
tatcattttcaagaagattgctatttactaatgaggaaaactataacactttcacgaaaaactctattcacgaacgaccttgggagaaagataaatgtta |
100 |
Q |
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| T |
12355516 |
tatcattttcaagaagattattatttactaatgaggaaaactataacactttcacgaaaaactctattcacgaacgactttgggagaaagataaatgcta |
12355615 |
T |
|
| Q |
101 |
tcatgatgctaagcttgattcgaattgattttaagaaagttaatgcaattagaagtatgcttggtgcatgttcctcacttgatactaggattgaatcgtt |
200 |
Q |
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| T |
12355616 |
tcacgatgctaagcttgattcgatttgattttaagaaagctaatgcaattggaagtatgcaaggtgcatgttcctcacttgatactagaattgaaacgtt |
12355715 |
T |
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| Q |
201 |
ttttcttcaaggatatggaagaccaaaattg |
231 |
Q |
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| T |
12355716 |
ttttcttcaaggatatgtaagaccaaaattg |
12355746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 12738894 - 12738745
Alignment:
| Q |
80 |
ttgggagaaagataaatgttatcatgatgctaagcttgattcgaattgattttaagaaagttaatgcaattagaagtatgcttggtgcatgttcctcact |
179 |
Q |
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| T |
12738894 |
ttgggagaaagataaatgttatcaagatgctaagcttgattcgatttgattttaagaaagctaatgcaattagaagtatgcaaggtgcatgttcctcact |
12738795 |
T |
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| Q |
180 |
tgatactaggattgaatcgttttttcttcaaggatatggaagaccaaaat |
229 |
Q |
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| T |
12738794 |
tgatactaggattgaatcgttttttcttcaaggatatggaagaccaaaat |
12738745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 12361435 - 12361578
Alignment:
| Q |
23 |
atttactaatgaggaaaactataacactttcacgaaaaactctattcacgaacgaccttgggagaaagataaatgttatcatgatgctaagcttgat--t |
120 |
Q |
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| T |
12361435 |
atttactaacgacgaaaattataacactttcatgacaaactctattcgcgaact---tagggagagagctaaatgtgatcctgatgctaagtttgatgtt |
12361531 |
T |
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| Q |
121 |
cgaattgattttaagaaagttaatgcaattagaagtatgcttggtgc |
167 |
Q |
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| T |
12361532 |
ccatttgattttaagaaagttaatgcatttagaactatgcttggtgc |
12361578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 42197811 - 42197763
Alignment:
| Q |
125 |
ttgattttaagaaagttaatgcaattagaagtatgcttggtgcatgttc |
173 |
Q |
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| T |
42197811 |
ttgattttaagaaagcaaatgcaattagaactatggttggtgcttgttc |
42197763 |
T |
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