View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_41 (Length: 245)
Name: NF1712_low_41
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29292779 - 29292543
Alignment:
| Q |
1 |
ctacctccaaatattaagtcctgggcgtggaatgatgtgttcaaagactcacattagattagataaaacattaaaataaatttataattgagaaatatct |
100 |
Q |
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| T |
29292779 |
ctacctccaaatattaagtcttaggcgtggaatgatgtgttcaaagactcacattagattagataaaacattaaaataaatttataagtgagaaatatct |
29292680 |
T |
|
| Q |
101 |
ctctttctacttgttggttttgttgttttaagttagattcaatacaaaatctaatacgatactagagcttatcttaatacctacttgaccatcagatatc |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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| T |
29292679 |
ctctttctactcgttggttttgttgttttaagttagattcaatacaaaatctaatacgatactagagcttatc-taatatctacttgaccatcggatatc |
29292581 |
T |
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| Q |
201 |
gagccactcaagtcacactttaaaggtagcctatgttt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29292580 |
gagccactcaagtcacactttaaaggtagcctatgttt |
29292543 |
T |
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