View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_43 (Length: 241)
Name: NF1712_low_43
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 1034134 - 1034273
Alignment:
| Q |
16 |
acattctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgtattgtagcatccaaggtcggaagtggaa |
115 |
Q |
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| T |
1034134 |
acattctacacttctgatccggttgtaggttatacggactatccctttcttgaatgaagaaaacaatgttgtattgtagcatccaaggttggaagtggaa |
1034233 |
T |
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| Q |
116 |
cctccatatttaataagctttttctccttgcaaatttgtt |
155 |
Q |
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| T |
1034234 |
cctccatatttaataagttttttctccttgcaaatttgtt |
1034273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 1044521 - 1044608
Alignment:
| Q |
16 |
acattctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgtattgtagcatccaagg |
103 |
Q |
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| T |
1044521 |
acattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgtattgcagcatccaagg |
1044608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 1059044 - 1059116
Alignment:
| Q |
16 |
acattctacacttctgatgcggttgtaggttatacggactatccctttctccaatgaagaaaacaatgttgta |
88 |
Q |
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| T |
1059044 |
acattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
1059116 |
T |
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