View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_45 (Length: 236)
Name: NF1712_low_45
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47736224 - 47736444
Alignment:
| Q |
1 |
tacatgtccacaacaaactacatagaaactttagtactattggttttgtcaacaggacggttacctaaacttgaatttaaaccgattccccaagatctag |
100 |
Q |
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| T |
47736224 |
tacatgtccacgacaaactacatagaaactttagtactattggttttgtcaacaggacggttacctaaacttgaatttaaaccgattccccaagatctag |
47736323 |
T |
|
| Q |
101 |
ttgttattgttaactaactttatttattttctaatcaaacgtgtgtgcatgaagctaagaaaccattttcatctcatgtttgctttgagtgtgttaagca |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47736324 |
ttgttattgttaactaactttatttattttataatcaaacgtgtgtgcatgaagccaagaaaccattttcatctcatgtttgctttgagtgtgttaagca |
47736423 |
T |
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| Q |
201 |
ataacaaaatgcagacataag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47736424 |
ataacaaaatgcagacataag |
47736444 |
T |
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