View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_5 (Length: 527)
Name: NF1712_low_5
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 4739915 - 4740123
Alignment:
| Q |
6 |
tatatcagtggctttaagaaccgttttataagtattccatatgttgagattttaactcactccctttggttacattatcaatttcttatcacatagttgg |
105 |
Q |
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| T |
4739915 |
tatatcagtggctttgtgaaccgttttataagtattccatatgttgagattttaactcagtccctttgattacattatcaatctcttatcacatatttgg |
4740014 |
T |
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| Q |
106 |
aggacgacgacagcgacataagcgatcaatacacactgaaacagtaggatatacacacgtacgcatcctacaatcaaaatctaccctgcaccttttatgt |
205 |
Q |
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| T |
4740015 |
aggacgacgacaacgacaaaggcgatcaatacacactgaaacagtaggatatacacacatacgcatcctacaatcaaaatctaccctacaccttttatgt |
4740114 |
T |
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| Q |
206 |
gctgtaatt |
214 |
Q |
| |
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||||||||| |
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| T |
4740115 |
gctgtaatt |
4740123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 278 - 439
Target Start/End: Original strand, 4740184 - 4740346
Alignment:
| Q |
278 |
gatatggaaatggcttaccactgacatcagttaccacaagaaaaatggaaataaagagaatcaataaattaacatacttaataattttgacca-nnnnnn |
376 |
Q |
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| T |
4740184 |
gatatggaaatggcttaccactgacatcagttaccacaagaaaaatggaaataaagagaatcaataaattaacatacttaataattttgaccattttttt |
4740283 |
T |
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| Q |
377 |
nnncttctcgtaagcttgcaatagaaccaaatttattgatcactttatattgtagaagttcta |
439 |
Q |
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| T |
4740284 |
cttcttctcttaagcttgcaatagaaccaaatttattgatcactttatattgtagaagttcta |
4740346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 4745433 - 4745525
Alignment:
| Q |
278 |
gatatggaaatggcttaccactgacatcagttaccacaagaaaaatggaaataaagagaatcaataaattaacatacttaataattttgacca |
370 |
Q |
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| T |
4745433 |
gatacggaaatagcttaccactaacatcagttacaacaagaaaaatggaaataaagaggatcaatagattaacatacttaataattttgacca |
4745525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 436
Target Start/End: Original strand, 4752208 - 4752357
Alignment:
| Q |
284 |
gaaatggcttaccactgacatcagttaccacaagaaaaatggaaataaagagaatcaataaattaacatacttaataattttgaccannnnnnnnncttc |
383 |
Q |
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| T |
4752208 |
gaaatggcttaccattgacgtcaactacaacaagaaacatgaaaataaagaggatcgataaattaacaaacttaataattttgcccatatttt----ttc |
4752303 |
T |
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| Q |
384 |
tcgtaag-cttgcaatagaaccaaatttattgatcactttatattgtagaagtt |
436 |
Q |
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| T |
4752304 |
tagtaagttttgcaatagaaagaaatttattgatcactttatattgtaaaagtt |
4752357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 4734762 - 4734843
Alignment:
| Q |
285 |
aaatggcttaccactgacatcagttaccacaagaaaaatggaaataaagagaatcaataaattaacatacttaataattttg |
366 |
Q |
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| T |
4734762 |
aaatagcttaccacttacgtcagttacaacaagaaacatgaaaataaagaggatcgataaattaataaacttaataattttg |
4734843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 4731954 - 4732012
Alignment:
| Q |
381 |
ttctcgtaagcttgcaatagaaccaaatttattgatcactttatattgtagaagttcta |
439 |
Q |
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| T |
4731954 |
ttctcgtaagcttgtagtagatagaaatttattgatcactttatgttgtaaaagttcta |
4732012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 4751981 - 4752030
Alignment:
| Q |
74 |
gttacattatcaatttcttatcacatagttggaggacgacgacagcgaca |
123 |
Q |
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| T |
4751981 |
gttacattgtcaatctcttatcacaaatttggaggacggcgacagcgaca |
4752030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 4731857 - 4731921
Alignment:
| Q |
287 |
atggcttaccactgacatcagttaccacaagaaaaatggaaataaagagaatcaataaattaaca |
351 |
Q |
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| T |
4731857 |
atggcttaccactagcgtcagctacaacaagaaacgtgaaaataaagaggatcaataaattaaca |
4731921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 4745222 - 4745318
Alignment:
| Q |
113 |
cgacagcgacataagcgatcaatacacactgaaacagtaggatatacacacgtacgcatcctacaatcaaaatctaccctgcaccttttatgtgctg |
209 |
Q |
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||||| ||||| ||| ||||||||||||||| || | |||||| |||| |||| || ||||||||||||||| || | |||||||| ||||||| |
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| T |
4745222 |
cgacaacgacaaaagggatcaatacacactggaataaggggatatgcacaactacgaattctacaatcaaaatcttccttacaccttttctgtgctg |
4745318 |
T |
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