View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_6 (Length: 507)
Name: NF1712_low_6
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 192 - 490
Target Start/End: Complemental strand, 28758403 - 28758105
Alignment:
| Q |
192 |
atgattattctggcttgtattttctcctccttgtgaattctaattgtactagtcagatataaaaaggttgaaattttgctttggcaatcaattttttaag |
291 |
Q |
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| T |
28758403 |
atgattattctggcttgtattttctcctccttgtgaattctaattgtactagtcagatataaaaaggttgaaattttgctttggcaatcaattttttaag |
28758304 |
T |
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| Q |
292 |
tgtttctttatgatagagggtaaagttatgcactaaagtaagttcataatttgacttaaggtcctcaattcagtaataaaattaaattaactaaagcaat |
391 |
Q |
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| T |
28758303 |
tgtttctttatgatagagggtaatgttatgcactaaagtaagttcataatttgacttaaggtcctcaattcagtaataaaattaaattaactaaagcaat |
28758204 |
T |
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| Q |
392 |
tgattccatgcttggcaatgacatctatgtcaatagcattacttttttcctctcttttattgcttcttttttaggttgattatcctttgttgactattg |
490 |
Q |
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| T |
28758203 |
tgattccatgcttggcaatgacatctatgtcaatagcattacttttttcctctcttttattgcttcttttttaggttgattatcctttgttgactattg |
28758105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 28758567 - 28758455
Alignment:
| Q |
27 |
atttgtcaatttatagtgggttaggcatgattttctagcatctatggtttttcttcattttattattattcatatatataactctgattttcaaagagct |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28758567 |
atttgtcaatttatagtgggttaggcatgattttctagcatctatggtttttcttcattttattattattcatatatataactctgattttcaaagagct |
28758468 |
T |
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| Q |
127 |
tttatgtggtaaa |
139 |
Q |
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| T |
28758467 |
tttatgtggtaaa |
28758455 |
T |
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