View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1712_low_9 (Length: 474)
Name: NF1712_low_9
Description: NF1712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1712_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 455
Target Start/End: Original strand, 28546492 - 28546940
Alignment:
| Q |
14 |
cataggaggaatttaattgcaagtattgtttgatatcttnnnnnnntttatcct-------taatccttagagtctgaatatactagtaaatgggggttc |
106 |
Q |
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| T |
28546492 |
cataggaggaatttaattgcaagtattgtttgatatattaaatttttttatccttattccttaatccttaaagtctgaatatactagtaaatgggggttc |
28546591 |
T |
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| Q |
107 |
acaagcaagcagtcttacaatcgtaagaaagcacaaatacgccgtagtgaccaaaactttctcatttctcactaagttgaccctttggcattattaccta |
206 |
Q |
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| T |
28546592 |
acaagcaagcagtcttacaatcgtaagaaagcacaaatacgccgtagtgaccaaaactttctcatttctcactaagttgaccctttggcattattaccta |
28546691 |
T |
|
| Q |
207 |
taatggatttccatcatagtgatatagattatagtatacaagatttggttttgtgtgtgtgagtatgttcatattgtgatttgtggttggagattgtcat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28546692 |
taatggatttccatcatagtgatatagattatagtatacaagatttggttttgtgtgtgtgagtatgttcatattgtgatttgtggttggagattgtcat |
28546791 |
T |
|
| Q |
307 |
gaaaacaaatagattagaaggatgtaaggatattcattaggttcattnnnnnnncaacagcgtcaagtctttgaagaggtacaaagctataaggacctca |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28546792 |
gaaaacaaatagattagaaggatgtaaggatattcattaggtttattaaaaaaacaagagcgtgaagtctttgaagaggtacaaagctataaggacctca |
28546891 |
T |
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| Q |
407 |
tgtaaggatattcattatgttcattgacattgtcccttcaagccaaggg |
455 |
Q |
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| T |
28546892 |
tgtaaggatattcattatgttcattgacattgttccttcaagccaaggg |
28546940 |
T |
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