View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17130_high_11 (Length: 397)

Name: NF17130_high_11
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17130_high_11
NF17130_high_11
[»] chr2 (6 HSPs)
chr2 (8-369)||(40056162-40056527)
chr2 (134-223)||(38356837-38356926)
chr2 (134-218)||(35063612-35063696)
chr2 (107-235)||(1299954-1300080)
chr2 (134-218)||(29453643-29453727)
chr2 (114-196)||(45513049-45513131)
[»] chr4 (7 HSPs)
chr4 (29-167)||(39484928-39485067)
chr4 (107-218)||(32641905-32642015)
chr4 (78-223)||(12007454-12007599)
chr4 (129-184)||(50072020-50072075)
chr4 (137-223)||(12007919-12008005)
chr4 (122-223)||(32641168-32641269)
chr4 (155-223)||(2486972-2487040)
[»] scaffold0119 (1 HSPs)
scaffold0119 (84-235)||(36-185)
[»] chr6 (2 HSPs)
chr6 (84-235)||(26670609-26670758)
chr6 (134-195)||(12029351-12029412)
[»] chr8 (5 HSPs)
chr8 (120-223)||(41456052-41456155)
chr8 (129-198)||(13231843-13231912)
chr8 (118-198)||(2623232-2623312)
chr8 (134-218)||(7043101-7043185)
chr8 (134-184)||(35595-35645)
[»] chr1 (6 HSPs)
chr1 (137-218)||(28651687-28651768)
chr1 (106-223)||(27818728-27818844)
chr1 (134-218)||(25476083-25476167)
chr1 (109-183)||(48621163-48621237)
chr1 (107-218)||(44634034-44634145)
chr1 (107-184)||(48621841-48621918)
[»] chr5 (5 HSPs)
chr5 (134-215)||(24153970-24154051)
chr5 (129-225)||(17115698-17115794)
chr5 (107-218)||(31079720-31079831)
chr5 (107-223)||(24153192-24153308)
chr5 (142-198)||(29108111-29108166)
[»] chr3 (8 HSPs)
chr3 (134-223)||(45004705-45004794)
chr3 (107-199)||(45146663-45146755)
chr3 (138-218)||(51489853-51489933)
chr3 (129-184)||(50766027-50766082)
chr3 (129-218)||(50823970-50824059)
chr3 (129-218)||(50851801-50851890)
chr3 (139-195)||(35744535-35744591)
chr3 (118-210)||(45005505-45005597)
[»] chr7 (2 HSPs)
chr7 (137-218)||(24555973-24556054)
chr7 (134-195)||(35263740-35263801)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 40056527 - 40056162
Alignment:
Q  8 gagaggaagcaaactatacaacaataatgaagaaccac-gttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagaaaac 106  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40056527 gagaggaagcaaacta--caacaataatgaagaaccaccgttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagcaaac 40056430  T
Q  107 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40056429 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggag 40056330  T
Q  207 gtgagtgtaattctcccattatctaatagttcaatggcacttacgtgccgttcttcacaccttctctagcgattgagatttgcaccaacgtggtggaacc 306  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40056329 gtgagtgtaattttcccattatctaatagttcaatggcacttacgtgccgttcttcacaccttctctagcgattgagatttgcaccaacgtggtggaacc 40056230  T
Q  307 aagtgagtaattgtgtggtta-----caacaagtggaccacgtagcagaaaaagaaaggatcacatat 369  Q
    |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  40056229 aagtgagtaattgtgtggttagggttcaacaagtggaccacgtagcagaaaaagaaaggatcacatat 40056162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 38356926 - 38356837
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 223  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||| ||||| | || ||| ||||||| |||||||||||||||| ||||    
T  38356926 aacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtgtaattttccc 38356837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 35063696 - 35063612
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    ||||||||||||||| ||||||||||| |||||||| || |||| |||| | |||| ||||||||||  ||||||||||||||||    
T  35063696 aacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggaggtgagtgtaatt 35063612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 1300080 - 1299954
Alignment:
Q  107 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 206  Q
    |||||| ||| |||||||||  || ||||| | || |||||||  || |||||||||||||||||||||||  ||||| |||| |||||| |||  ||||    
T  1300080 aagggaggtgtttgtctatttcattagaacattagagaggttagcgttagttttgaaactagaaggggtgt--gtgtcattttaataaacttcaaaggag 1299983  T
Q  207 gtgagtgtaattctcccattatctaatag 235  Q
    |||||||||||| || ||||| |||||||    
T  1299982 gtgagtgtaattttctcattagctaatag 1299954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 29453643 - 29453727
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    ||||||| ||||||||||||||||||  |||||||| | |||||||||||  |||||||||||||| | ||| |||| |||||||    
T  29453643 aacttaaaggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacctcgggggatgtgaatgtaatt 29453727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 45513049 - 45513131
Alignment:
Q  114 gtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaac 196  Q
    |||||||||||||  || | |||||| ||||||||||||| ||||| ||||||||| |||||||   ||||||||| ||||||    
T  45513049 gtgattgtctatttgattaaaacttacgggaggttaatgttagtttcgaaactagagggggtgtcgatgtcgttttaataaac 45513131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 39484928 - 39485067
Alignment:
Q  29 caataatgaagaaccac-gttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagaaaacaagggatgtgattgtctatta 127  Q
    ||||| ||||||||| | ||||||||||| ||||||| |||||||||||| |||||| || ||||| || |||  ||| |||||||||| || | |||||    
T  39484928 caatattgaagaacctccgttaaatattaatggaaaaatctctaaagaaagtaacagtaatttaacagtgttaacaaagaagggatgtgcttatttatta 39485027  T
Q  128 tatgagaacttaagggaggttaatgtaagttttgaaacta 167  Q
     ||||||||||||| ||||||| |||||||||||||||||    
T  39485028 catgagaacttaagcgaggttagtgtaagttttgaaacta 39485067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 32641905 - 32642015
Alignment:
Q  107 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 206  Q
    ||||| |||| | ||||||| |||||||| ||||||||||||||| |||||||| ||| || |||||| ||||||||| ||| |||| || || | ||||    
T  32641905 aaggggtgtgttagtctattttatgagaatttaagggaggttaatataagttttaaaatta-aaggggggttagtgtcatttacatagacttcgggggag 32642003  T
Q  207 gtgagtgtaatt 218  Q
    ||||||||||||    
T  32642004 gtgagtgtaatt 32642015  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 12007599 - 12007454
Alignment:
Q  78 ttaacagaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgt 177  Q
    |||||||||||||||  || |||   || |||||| ||| |||| ||||  ||||||||||||| |||||||||||| ||||| |||||||| |||||||    
T  12007599 ttaacagaaagttaatggtgttaatgaaaaagggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgt 12007500  T
Q  178 tagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 223  Q
     |||||| ||||  ||||||  || ||||||  |||||||| ||||    
T  12007499 cagtgtcattttagtaaaccataggggaggttggtgtaattttccc 12007454  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 50072020 - 50072075
Alignment:
Q  129 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 184  Q
    ||||||||||||||||||||  |||||||||| |||||| | ||||||||||||||    
T  50072020 atgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtc 50072075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 12007919 - 12008005
Alignment:
Q  137 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 223  Q
    ||||||||||||| |||||||||| ||| |||| ||||||| |||||| ||||  |||| || || ||||||| |||||||| ||||    
T  12007919 ttaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgtaattttccc 12008005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 32641269 - 32641168
Alignment:
Q  122 ctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctc 221  Q
    ||||| ||||||||||||||||| |||| ||||| |||| ||| |||| | ||||| |||||| ||| |||| || ||||  |||||| |||||||| ||    
T  32641269 ctattttatgagaacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcatttacatagacttcaggagaggtgggtgtaattatc 32641170  T
Q  222 cc 223  Q
    ||    
T  32641169 cc 32641168  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 2486972 - 2487040
Alignment:
Q  155 agttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 223  Q
    |||||| |||||||||||||||| ||||||||||| ||| |||| || |||||| | ||||||| ||||    
T  2486972 agttttaaaactagaaggggtgtcagtgtcgttttaatagaccttagtggaggtcattgtaattttccc 2487040  T

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Target: scaffold0119 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 235
Target Start/End: Original strand, 36 - 185
Alignment:
Q  84 gaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 183  Q
    |||||||||| || |||  ||| |||||| ||| |||||||||  || ||||| | ||||||||||  || |||||||||||||||||||||||  ||||    
T  36 gaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggggtgt--gtgt 133  T
Q  184 cgttttcataaacctcagcggaggtgagtgtaattctcccattatctaatag 235  Q
    | |||| ||||||||||  |||||||||||||||| || ||||| |||||||    
T  134 cattttaataaacctcaagggaggtgagtgtaattttctcattagctaatag 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 26670758 - 26670609
Alignment:
Q  84 gaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 183  Q
    |||||||||| || |||  ||| |||||| ||| |||||||||  || ||||| | ||||||||||  || |||||||||||||||||||||||  ||||    
T  26670758 gaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggggtgt--gtgt 26670661  T
Q  184 cgttttcataaacctcagcggaggtgagtgtaattctcccattatctaatag 235  Q
    | |||| ||||||||||  |||||||||||||||| || ||||| |||||||    
T  26670660 cattttaataaacctcaagggaggtgagtgtaattttctcattagctaatag 26670609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 12029412 - 12029351
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 195  Q
    ||||||||||| ||||||||   |||||||||||||  ||||||||||||| |||| |||||    
T  12029412 aacttaagggatgttaatgttcattttgaaactagagagggtgttagtgtcattttaataaa 12029351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 41456052 - 41456155
Alignment:
Q  120 gtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattc 219  Q
    ||||||| || ||||||||||||||||||| |||||||||  ||| |||| | | ||| |||||| |||||||| ||||||| ||||||||||||||||     
T  41456052 gtctattttacgagaacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgtaatta 41456151  T
Q  220 tccc 223  Q
    ||||    
T  41456152 tccc 41456155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 13231843 - 13231912
Alignment:
Q  129 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 198  Q
    ||||||||| ||||||||||| |||||||||| ||| |||| ||||||| |||||| ||||  |||||||    
T  13231843 atgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaacct 13231912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 2623232 - 2623312
Alignment:
Q  118 ttgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 198  Q
    |||||||||  |||| |||| ||||||||||| |||||||||| ||| |||| ||| ||| |||||| |||| ||||||||    
T  2623232 ttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacct 2623312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 7043185 - 7043101
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    |||||||||||||||||| |   |||| |||||||| | |||||||||| | |||| |||||||| || ||||||||||| ||||    
T  7043185 aacttaagggaggttaatattcattttaaaactagaggtggtgttagtgccattttaataaaccttaggggaggtgagtgcaatt 7043101  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 35645 - 35595
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 184  Q
    ||||||||| ||||||||||||||||| |||||| || ||||||| |||||    
T  35645 aacttaaggaaggttaatgtaagttttaaaactaaaaagggtgtttgtgtc 35595  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 28651768 - 28651687
Alignment:
Q  137 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||| |||| ||| ||||||| |||||||| |||||||    
T  28651768 ttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacctcaggggaggtgattgtaatt 28651687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 27818844 - 27818728
Alignment:
Q  106 caagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcgga 205  Q
    ||||||| |||  ||||||||| | || || |||||||| || |||||| ||||| ||||||||  ||||||||||||| |||||||||| | ||| |||    
T  27818844 caagggaggtgtctgtctattaaaggaaaatttaagggatgtaaatgtatgttttaaaactagagagggtgttagtgtcattttcataaatc-cagggga 27818746  T
Q  206 ggtgagtgtaattctccc 223  Q
    ||||||||||||| ||||    
T  27818745 ggtgagtgtaattttccc 27818728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 25476083 - 25476167
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    ||||| |||||||||  |||||||||| |||||||| || |||| |||||| |||| ||||||||||| |||||||| |||||||    
T  25476083 aacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacctcaggggaggtgaatgtaatt 25476167  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 48621237 - 48621163
Alignment:
Q  109 gggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 183  Q
    |||||||| |||||||||| |||| |||||||||||| |||||||||  ||| |||||||| ||||||| |||||    
T  48621237 gggatgtgtttgtctattacatgataacttaagggagattaatgtaaaatttaaaactagagggggtgtcagtgt 48621163  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 44634034 - 44634145
Alignment:
Q  107 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 206  Q
    |||||| |||||||| ||||  ||||||||||||||||||||  | |  ||||| |||||||| ||||||| | |||| ||||  ||||| | || ||||    
T  44634034 aagggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattttagtaaactttaggggag 44634133  T
Q  207 gtgagtgtaatt 218  Q
    ||||||| ||||    
T  44634134 gtgagtgcaatt 44634145  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 48621841 - 48621918
Alignment:
Q  107 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 184  Q
    |||||| |||||||| ||||| |  | |||||||||||||||| |||| ||||| |||||| | |||||||| |||||    
T  48621841 aagggaggtgattgtgtattacaaaaaaacttaagggaggttagtgtatgtttttaaactaaagggggtgttggtgtc 48621918  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 24153970 - 24154051
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgta 215  Q
    |||||||||||||||||||| |||||| |||||||| ||||| | | |||| |||| |||||||| || |||||||||||||    
T  24153970 aacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggtgagtgta 24154051  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 17115794 - 17115698
Alignment:
Q  129 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctcccat 225  Q
    ||||||||||||||||||||  |||||||||| ||||||||   |||||||||||| |||  |   | ||||| ||||||||| |||||| ||||||    
T  17115794 atgagaacttaagggaggttggtgtaagttttaaaactagagttggtgttagtgtcatttcaacgtaactcagaggaggtgagagtaattttcccat 17115698  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 31079720 - 31079831
Alignment:
Q  107 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 206  Q
    |||||||||| |||||||||   ||| ||| ||||||||||||||||   |||| ||||||||   |||||||||| | |||| |||||||| || ||||    
T  31079720 aagggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccattttaataaaccttaggggag 31079819  T
Q  207 gtgagtgtaatt 218  Q
    || |||| ||||    
T  31079820 gtaagtgcaatt 31079831  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 24153308 - 24153192
Alignment:
Q  107 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 206  Q
    |||||| ||| ||||| |||  || |||||||||||||||||| ||| | |||| ||||||||  ||||||  || || |||| ||| ||||||  | ||    
T  24153308 aagggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctcaaggaag 24153209  T
Q  207 gtgagtgtaattctccc 223  Q
    |||||||||||| ||||    
T  24153208 gtgagtgtaattttccc 24153192  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 29108166 - 29108111
Alignment:
Q  142 ggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 198  Q
    |||||||| |||||||||| |||||||| |||||||||||||| ||||  |||||||    
T  29108166 ggaggttagtgtaagttttaaaactaga-ggggtgttagtgtcatttttgtaaacct 29108111  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 45004794 - 45004705
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 223  Q
    ||||||||||||||| ||||||| ||| |||||| | ||||||| | || | |||| ||||||||||| |||||||||||||||| ||||    
T  45004794 aacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattgacattttaataaacctcagaggaggtgagtgtaattttccc 45004705  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 45146663 - 45146755
Alignment:
Q  107 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctc 199  Q
    |||||| ||| |||||||||  || ||||| |||||||||||| ||| |||||| ||| |||||||| |||| ||||| |||| |||||||||    
T  45146663 aagggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacctc 45146755  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 51489853 - 51489933
Alignment:
Q  138 taagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    |||||||||||||| |   |||| |||||||| |||||||||||| | |||| |||||||| || ||||||||||| ||||    
T  51489853 taagggaggttaatattcattttaaaactagagggggtgttagtgccattttaataaaccttaggggaggtgagtgcaatt 51489933  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 50766082 - 50766027
Alignment:
Q  129 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 184  Q
    |||| |||||||||||| ||| |||| ||||| |||||||| ||||||||||||||    
T  50766082 atgaaaacttaagggagattagtgtaggttttcaaactagagggggtgttagtgtc 50766027  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 50824059 - 50823970
Alignment:
Q  129 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||  ||||||||||||| |||  ||||| ||||  |||||||  |||||||    
T  50824059 atgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtggatgtaatt 50823970  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 50851801 - 50851890
Alignment:
Q  129 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||  ||||||||||||| |||  ||||| ||||  |||||||  |||||||    
T  50851801 atgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtggatgtaatt 50851890  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 35744535 - 35744591
Alignment:
Q  139 aagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 195  Q
    ||||||||||||||| |||||||||| |||| ||| ||| | ||||||||| |||||    
T  35744535 aagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaa 35744591  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 45005505 - 45005597
Alignment:
Q  118 ttgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtga 210  Q
    |||||||||  ||||||||||||||||| | | ||| |||||| |||||||  |   |||||||||| |||| ||||||||||  ||||||||    
T  45005505 ttgtctatttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtga 45005597  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 24555973 - 24556054
Alignment:
Q  137 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 218  Q
    |||||||||||||||||   || | |||||||| |||||||| |||||||||  | ||||||||| |||||| |||||||||    
T  24555973 ttaagggaggttaatgtctattattaaactagagggggtgtttgtgtcgtttgaacaaacctcaggggaggttagtgtaatt 24556054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 35263801 - 35263740
Alignment:
Q  134 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 195  Q
    ||||||||||||||||||||||||||  ||| ||||| || ||||| |||| ||||||||||    
T  35263801 aacttaagggaggttaatgtaagtttcaaaattagaaaggatgttaatgtcattttcataaa 35263740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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