View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17130_high_19 (Length: 357)

Name: NF17130_high_19
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17130_high_19
NF17130_high_19
[»] chr7 (6 HSPs)
chr7 (180-349)||(22069088-22069256)
chr7 (1-71)||(22068876-22068946)
chr7 (98-183)||(22068974-22069059)
chr7 (254-349)||(22062703-22062796)
chr7 (254-349)||(22087663-22087756)
chr7 (98-133)||(22087005-22087040)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 180 - 349
Target Start/End: Original strand, 22069088 - 22069256
Alignment:
Q  180 tccactaatacacatctttatttgttttcgtcaaacaacaaaagtattagggtttgtcnnnnnnnnnnnnncacaagtattagggttcagcgttacagct 279  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||             |||||||||||||||||||||||||||||    
T  22069088 tccacaaatacacatctttatttgttttcgtcaaacaacaaaagtactagggtttgtcaaaaataaaaaa-cacaagtattagggttcagcgttacagct 22069186  T
Q  280 ccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctcccttcatctca 349  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  22069187 ccaattctccaaaaacggcaccgccttggtaacaacaaaactccaacatgaatctcctccctccatctca 22069256  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22068876 - 22068946
Alignment:
Q  1 tactacgattaatgtgaagttgaaattttttattttgctatggaaaagatagagtgtacacaaaaaaggag 71  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22068876 tacttcgattaatgtgaagttgaaattttttattttgctatggaaaagatagagtgtacacaaaaaaggag 22068946  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 22068974 - 22069059
Alignment:
Q  98 tgtttgttggagagaaagtatatcatttgtttgttatagnnnnnnnntatggaatcaaacttatccaaaagagaaaatgtcttcca 183  Q
    ||||||||||||||||||||||||| |||||||||||||        |||||||| ||||||||||||||||||||||||||||||    
T  22068974 tgtttgttggagagaaagtatatcaattgtttgttatagaaaaaaaatatggaatgaaacttatccaaaagagaaaatgtcttcca 22069059  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 22062703 - 22062796
Alignment:
Q  254 aagtattagggttcagcgttacagctccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctcccttcatctca 349  Q
    |||||||||||||||||||| |||||||||||| |||||   ||||| || || ||||||||||||||||| |||||||||||||||| |||||||    
T  22062703 aagtattagggttcagcgtttcagctccaattcaccaaac--ggcacagcctttgtaacaacaaaactccatcatgaatctcctccctccatctca 22062796  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 22087663 - 22087756
Alignment:
Q  254 aagtattagggttcagcgttacagctccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctcccttcatctca 349  Q
    |||||||||||||||||||| |||||||||||||||  ||| ||| | |  ||||||| || |||||||||| ||||||||||||||| |||||||    
T  22087663 aagtattagggttcagcgtttcagctccaattctcc--aaacggcgctgtattggtaataagaaaactccaatatgaatctcctccctccatctca 22087756  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 22087005 - 22087040
Alignment:
Q  98 tgtttgttggagagaaagtatatcatttgtttgtta 133  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22087005 tgtttgttggagagaaagtatatcaattgtttgtta 22087040  T

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