View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17130_high_1_N (Length: 592)
Name: NF17130_high_1_N
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17130_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 22 - 563
Target Start/End: Original strand, 7161125 - 7161666
Alignment:
| Q |
22 |
tcatcactataccaatcaacaacaacaaccttgtaagtgtcacttacatgatcatagccaaagccatacagtctgcaaagcccctctcgttctggatagc |
121 |
Q |
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| T |
7161125 |
tcatcactataccaatcaacaacaacaaccttgtaagtgtcacttacatgatcatagccaaagccatacagtctgcaaagcccctctcgttctgtatagc |
7161224 |
T |
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| Q |
122 |
ccaaagagggcaatttagtaaatttatgaatggaaggattccacacaagagggggagctttaccgagactgaaacagaggatgccgcggcatgaaccaat |
221 |
Q |
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| T |
7161225 |
ccaaagagggcaatttagtaaatttctgaatggaaggattccacacaagagggggagctttaccgagactgaaacagaggatgccgcggcatgaaccaat |
7161324 |
T |
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| Q |
222 |
gaagtgatcccaactttgattgtttagaccgaactgtagctgcaagggagtggtggtaggggtgatttctgtgaaaacggaggagagagggtaatacttg |
321 |
Q |
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| T |
7161325 |
gaagcgatcccaactttgatcgtttagagggaactgtagctgcaagggagtggtggtaggggtgatttctgtgaaaacggaggagagagggtaataattg |
7161424 |
T |
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| Q |
322 |
agtgagggtttggttttatctgagacaagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccagg |
421 |
Q |
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| T |
7161425 |
agtgagggtttggttttatctgagacaagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagatatttccagg |
7161524 |
T |
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| Q |
422 |
atttgcagacagatttgagttgcatgagggatttgactggaagcctggaaagaatttcagccacgatgtcaaacgtaagactgggaagaggctgttggtg |
521 |
Q |
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| T |
7161525 |
atttgcagaccgatttgagttgcatgagggatttgactggaagcctggaaagaatttcagccacgatgtcaaacgtaagactgggaagaggctgttggtg |
7161624 |
T |
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| Q |
522 |
aagtgaatctccaggagtgatggaggaggaagatgatgatgc |
563 |
Q |
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| T |
7161625 |
aagtgaatctccaggagtgatggaggaggaagatgatgatgc |
7161666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 348 - 485
Target Start/End: Original strand, 7169393 - 7169530
Alignment:
| Q |
348 |
aagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttgcatg |
447 |
Q |
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| T |
7169393 |
aagacggtggagcgtggttgacaagcgaaggtgattcttagcgaattttgaatcggagataagagatttccaggacttacagacggattggagttgcatg |
7169492 |
T |
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| Q |
448 |
agggatttgactggaagcctggaaagaatttcagccac |
485 |
Q |
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| T |
7169493 |
agaaacttgactggaagcctggagagaatttccgccac |
7169530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 360 - 468
Target Start/End: Original strand, 7175055 - 7175163
Alignment:
| Q |
360 |
cgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttgcatgagggatttgact |
459 |
Q |
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| T |
7175055 |
cgtggttgacacgcgaaggttcttcttggtgaaatttgaatctgagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgact |
7175154 |
T |
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| Q |
460 |
ggaagcctg |
468 |
Q |
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| T |
7175155 |
ggaagcctg |
7175163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 344 - 476
Target Start/End: Complemental strand, 11237045 - 11236913
Alignment:
| Q |
344 |
agacaagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttg |
443 |
Q |
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| T |
11237045 |
agacgagatggaggcgcgtggtggacacgtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttg |
11236946 |
T |
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| Q |
444 |
catgagggatttgactggaagcctggaaagaat |
476 |
Q |
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| T |
11236945 |
catgaggtatttgactggcagcctggagagaat |
11236913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 11237370 - 11237232
Alignment:
| Q |
34 |
caatcaacaacaacaaccttgtaagtgtcacttacatgatcatagccaaagccatacagtctgcaaagcccctctcgttctggatagcccaaagagggca |
133 |
Q |
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|||| |||| |||||||||||||| ||||| | ||||||||||||||||| ||||| | | || || ||| ||||||| ||||| ||||||| || |
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| T |
11237370 |
caataaacagcaacaaccttgtaaatgtcattgacatgatcatagccaaaaccataaattgtgtaactcccatctcgttttggattatccaaagatggtg |
11237271 |
T |
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| Q |
134 |
atttagtaaatttatgaatggaaggattccacacaagag |
172 |
Q |
| |
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| T |
11237270 |
atttcgtaaatttcttaatggaagggttccacaaaagag |
11237232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 412 - 467
Target Start/End: Complemental strand, 24722641 - 24722586
Alignment:
| Q |
412 |
gatttccaggatttgcagacagatttgagttgcatgagggatttgactggaagcct |
467 |
Q |
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| T |
24722641 |
gatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaagcct |
24722586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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