View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17130_high_21 (Length: 344)
Name: NF17130_high_21
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17130_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 4535023 - 4534718
Alignment:
| Q |
13 |
aatattacatagataaaagagaaactaatcaaaaaagttcttctcaacaatagattaaaaatctcttgatgattcaaatgtcactacaaaagaaatgaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4535023 |
aatattacatagataaaagagaaactaatcaaaaaagttcttctcaacaatagattaaaaatctcttgatgattcaaatgtcactacaaaagaaatgaat |
4534924 |
T |
|
| Q |
113 |
ggaactatcaatgaatataaattcagattttttataaataaaattgagcaatgaataagttgagcatctaaggatggaaaggtcgagatcttgtccatca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4534923 |
ggaactatcaatgaatataaattcagattttttataaataaaattgagcaatgaataagttgagcatctaaggatggaaaggtcgagatcttgtctgtca |
4534824 |
T |
|
| Q |
213 |
tcgacgtcattctgctggggtttccagcgagatcaataccgttattaaaagcaacctacagagcagcaaattgaaaatatttatactacttataatacat |
312 |
Q |
| |
|
|| |||||||||||| || |||||| ||||||||||||| || ||||||||||||||||||| ||| |||| ||||||||||||||| || | ||||| |
|
|
| T |
4534823 |
tcaacgtcattctgcaggagtttcctgcgagatcaatacggtgattaaaagcaacctacagaaaagccaattataaatatttatactacatagagtacat |
4534724 |
T |
|
| Q |
313 |
aagtat |
318 |
Q |
| |
|
|||||| |
|
|
| T |
4534723 |
aagtat |
4534718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 24061896 - 24062043
Alignment:
| Q |
13 |
aatattacatagataaaagagaaactaatcaaaaaa-gttcttctcaacaatagattaaaaatctcttgat-gattcaaatgtcactacaaaagaaatga |
110 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||| ||| || ||||||||||||| || |||||||||| | | |||||| ||||| ||||||||||| |
|
|
| T |
24061896 |
aatattacataaataaacgataaactaataaaaaaaagtttttttcaacaatagattcaacatctcttgatggctccaaatgccactaaaaaagaaatga |
24061995 |
T |
|
| Q |
111 |
atgg-aactatcaatgaatataaattcagattttttataaataaaatt |
157 |
Q |
| |
|
|||| || ||| |||||||||||||| | |||| | ||||||||||| |
|
|
| T |
24061996 |
atggaaaatattaatgaatataaatttatatttctagtaaataaaatt |
24062043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 3975751 - 3975660
Alignment:
| Q |
24 |
gataaaagagaaactaatcaaaaaagtt-cttctcaacaatagattaaaaatctcttgatga-ttcaaatgtcactacaaaagaaatgaatg |
113 |
Q |
| |
|
||||||||| ||| || |||||||| || ||||||||||||||||| || |||||||||| | | |||| | ||||||||||||||||||| |
|
|
| T |
3975751 |
gataaaagataaagtagtcaaaaaaattacttctcaacaatagattcaacatctcttgataactccaaagttaactacaaaagaaatgaatg |
3975660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 48867420 - 48867392
Alignment:
| Q |
13 |
aatattacatagataaaagagaaactaat |
41 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48867420 |
aatattacatagataaaagagaaactaat |
48867392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University