View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17130_high_23 (Length: 342)
Name: NF17130_high_23
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17130_high_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 42445698 - 42445377
Alignment:
| Q |
21 |
acatcatctgagagactgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttccta |
120 |
Q |
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| T |
42445698 |
acatcagctgagagactgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttccta |
42445599 |
T |
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| Q |
121 |
taccccctcccctctcacacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctgcttcgccatttattcc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
42445598 |
taccccctcccctctcacacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcc |
42445499 |
T |
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| Q |
221 |
tgcatatgctaagggcaacagtgttggagagaaatcggaaggctggaaaacagattcgccctcaaatccttccccatttccaagcactgctgttgccaca |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42445498 |
tgcatatgctaagggcaacagtgttggagagaaatcggaaggctggaaaacagattcgccctcaaattcttccccatttccaagcactgctgttgccaca |
42445399 |
T |
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| Q |
321 |
atggttctgtcaatagtgcttg |
342 |
Q |
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|||||||||||||||||||||| |
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| T |
42445398 |
atggttctgtcaatagtgcttg |
42445377 |
T |
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