View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17130_high_25 (Length: 334)

Name: NF17130_high_25
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17130_high_25
NF17130_high_25
[»] chr3 (2 HSPs)
chr3 (147-325)||(14426189-14426370)
chr3 (107-151)||(5634070-5634114)
[»] chr1 (2 HSPs)
chr1 (58-325)||(23221987-23222254)
chr1 (69-154)||(25131244-25131329)
[»] chr8 (1 HSPs)
chr8 (42-325)||(16053705-16053990)
[»] chr6 (2 HSPs)
chr6 (1-325)||(15577127-15577438)
chr6 (51-123)||(18388062-18388134)
[»] chr2 (4 HSPs)
chr2 (56-291)||(9501094-9501327)
chr2 (124-263)||(28279697-28279837)
chr2 (232-326)||(22389817-22389915)
chr2 (67-138)||(29709435-29709506)
[»] chr4 (1 HSPs)
chr4 (42-291)||(1697360-1697610)
[»] chr5 (2 HSPs)
chr5 (110-291)||(24840263-24840446)
chr5 (214-325)||(16604415-16604531)
[»] scaffold0043 (1 HSPs)
scaffold0043 (232-326)||(57547-57645)
[»] chr7 (2 HSPs)
chr7 (189-282)||(19709337-19709430)
chr7 (94-154)||(16166419-16166479)
[»] scaffold1429 (1 HSPs)
scaffold1429 (189-283)||(837-932)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 147 - 325
Target Start/End: Original strand, 14426189 - 14426370
Alignment:
Q  147 aacccatatttttatttaaagtcatttaagtttcagttatttattttacatagccactcaatctcataatttctttattttattgttgctaactcacgac 246  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14426189 aacccatatttttattttaagtcatttaagtttcagtcatttattttacatagccactcaatctcataatttctttattttattgttgctaactcacgac 14426288  T
Q  247 taggcgtgttgtttttacatg-attgcataactttccttttcaaaatctct--aaaaaattgttttagtcttggagaattat 325  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||||||    
T  14426289 taggcttgttgtttttacatgaattgcataactttccttttctaaatctctaaaaaaaattgttttagtcttgtagaattat 14426370  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 5634114 - 5634070
Alignment:
Q  107 cgtcaagctcgagacgctaaacaaacgttgaaaggaaggcaaccc 151  Q
    |||||||||||||||||||||||| |||||||   ||||||||||    
T  5634114 cgtcaagctcgagacgctaaacaagcgttgaacaaaaggcaaccc 5634070  T

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Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 23221987 - 23222254
Alignment:
Q  58 gacaaggaacctgaaggtttggggttcccagcctcaccttagacaagtgcgtcaagctcgagacgctaaacaaacgttgaaaggaaggcaacccatattt 157  Q
    |||||||||||||||||||||||||||| |  |||||||||||||| || |||||||||||| | |||||||| ||||||| |  |||||||||||||||    
T  23221987 gacaaggaacctgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcgaggctctaaacaagcgttgaatgtgaggcaacccatattt 23222086  T
Q  158 ttatttaaagtcatttaagtttcagttatttattttacatagccactcaatctcataatttctttattttattgttgctaactcacgactaggcgtgttg 257  Q
    |||||| || |||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||||| |||||||| | ||||    
T  23222087 ttattttaaatcatttaaatttcagtcatttattttacatagccactccatctcataatttatttcttttattgtttctaactcgcgactaggtgcgttg 23222186  T
Q  258 tttttacatg-attgcataactttccttttcaaaatctctaaaaaattgttttagtcttggagaattat 325  Q
    |||| ||||| |||||| |||||||  ||||||||  |||||||  ||||||||| ||||| |||||||    
T  23222187 ttttaacatgaattgcacaactttctctttcaaaa-atctaaaattttgttttagccttggtgaattat 23222254  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 25131329 - 25131244
Alignment:
Q  69 tgaaggtttggggttcccagcctcaccttagacaagtgcgtcaagctcgagacgctaaacaaacgttgaaaggaaggcaacccata 154  Q
    |||| |||||||| |||||  ||||  ||||| || |||||||||||| ||| ||||||||| ||||||| || || |||||||||    
T  25131329 tgaaagtttggggctcccaagctcagtttagataaatgcgtcaagctcaagatgctaaacaagcgttgaatgggagacaacccata 25131244  T

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Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 42 - 325
Target Start/End: Complemental strand, 16053990 - 16053705
Alignment:
Q  42 agatgaggaagaaaaagacaaggaacctgaaggtttggggttcccagcctcaccttagacaagtgcgtcaagctcgagacgctaaacaaacgttgaaagg 141  Q
    ||||||||||||| ||||||||||  |||||||||| |||||||||  ||||||||| |  | |||||||| ||||||||||||||||| ||||||| ||    
T  16053990 agatgaggaagaagaagacaaggatactgaaggtttagggttcccaagctcaccttatatgaatgcgtcaaactcgagacgctaaacaagcgttgaatgg 16053891  T
Q  142 aaggcaacccatatttttatttaaagtcatttaagtttcagttatttattttacatagccactcaatctcataatttctttattttattgttgctaactc 241  Q
    ||| |||||||||| ||||| |  |||||||||| ||  | | |||||||||||||||||| || || ||||||||||||| |||||||||||||||||     
T  16053890 aagacaacccatatgtttatctccagtcatttaaattgtattaatttattttacatagccattccatatcataatttctttcttttattgttgctaactt 16053791  T
Q  242 acgactaggcgtgttgtttttaca-tgattgcataactttccttttc-aaaatctctaaaaaattgttttagtcttggagaattat 325  Q
     ||||||||||   |||||||||| | ||||||||||| || ||||| |||||||| |||   |||||||||||||||| ||||||    
T  16053790 gcgactaggcgcaatgtttttacattaattgcataactctcattttcaaaaatctcaaaagttttgttttagtcttggaaaattat 16053705  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 15577438 - 15577127
Alignment:
Q  1 gaagaagactacggatggacagattcttaatgagtctgttcagatgaggaagaaaaagacaaggaacctgaaggtttggggttcccagcctcaccttaga 100  Q
    ||||||||||| | |||| |||||| | || |||  |||||||| ||||||||| |||| |||||||||||||||||||||||| ||  ||||||||| |    
T  15577438 gaagaagactatgaatggtcagattatgaaggagattgttcagacgaggaagaagaagagaaggaacctgaaggtttggggttctcaagctcaccttaca 15577339  T
Q  101 caagtgcgtcaagctcgagacgctaaacaaacgttgaaaggaaggcaacccatatttttatttaaagtcatttaagtttcagttatttattttacatagc 200  Q
    ||| |  |||||| |||||| ||||||||| ||||||| || |||||||||||||               ||||| ||||||| ||||||||| ||||||    
T  15577338 caaataagtcaagttcgagatgctaaacaagcgttgaatgggaggcaacccatat---------------tttaattttcagtcatttatttttcatagc 15577254  T
Q  201 cactcaatctcataatttctttattttattgttgctaactcacgactaggcgtgttgtttttacatg-attgcataactttccttttcaaaatctctaaa 299  Q
      ||| |||||||||| | ||| | ||||| |||||||||| |||||||||   || |||||||||| ||||||||||||| | ||||||||    ||||    
T  15577253 agctccatctcataatatgtttctcttattattgctaactcgcgactaggcacattatttttacatgaattgcataacttttcctttcaaaaataataaa 15577154  T
Q  300 aaa-ttgttttagtcttggagaattat 325  Q
    ||| ||||||||| |||||||||||||    
T  15577153 aaatttgttttagacttggagaattat 15577127  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 18388062 - 18388134
Alignment:
Q  51 agaaaaagacaaggaacctgaaggtttggggttcccagcctcaccttagacaagtgcgtcaagctcgagacgc 123  Q
    |||| |||||| |||||||| ||| | ||||||||||  |||| ||||||||  || ||||||||||||||||    
T  18388062 agaagaagacatggaacctggaggataggggttcccaagctcaacttagacacatgtgtcaagctcgagacgc 18388134  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 291
Target Start/End: Original strand, 9501094 - 9501327
Alignment:
Q  56 aagacaaggaacctgaaggtttggggttcccagcctcaccttagacaagtgcgtcaagctcgagacgctaaacaaacgttgaaaggaaggcaacccatat 155  Q
    |||||| |||||||  | ||| ||||||||||  |||| ||||||||  ||||||||||||||||   ||||||||||||||| || |||||||||||||    
T  9501094 aagacatggaacctagatgttaggggttcccaagctcaacttagacacatgcgtcaagctcgagatattaaacaaacgttgaatgggaggcaacccatat 9501193  T
Q  156 ttttatttaa-agtcatttaagtttcagttatttattttacatagccactcaatctcataatttctttattttattgttgctaactcacgactaggcgtg 254  Q
    ||||||||   |||||||| | ||||| | ||||    |||||| |||||| |||||||||||||||| ||||| ||||||||  || ||||||| || |    
T  9501194 ttttatttttcagtcatttcaatttcaataattt----tacatatccactccatctcataatttctttcttttaatgttgctacttcgcgactagacgcg 9501289  T
Q  255 ttgtttttacatg-attgcataactttccttttcaaaa 291  Q
    ||||||||||||| ||||||| ||||||||||| ||||    
T  9501290 ttgtttttacatgaattgcattactttcctttttaaaa 9501327  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 28279837 - 28279697
Alignment:
Q  124 taaacaaacgttgaaaggaaggcaacccatatttttatttaa-agtcatttaagtttcagttatttattttacatagccactcaatctcataatttcttt 222  Q
    ||||||| ||||| |||| ||| ||||||| |||| ||||   ||| |||||| ||||| | | |||||||||||||||||||||||| |||| ||||||    
T  28279837 taaacaagcgttggaagggaggaaacccatcttttgatttttcagtaatttaaatttcattcacttattttacatagccactcaatcttataagttcttt 28279738  T
Q  223 attttattgttgctaactcacgactaggcgtgttgttttta 263  Q
     ||||| ||||| |||||| |||||||||| ||||||||||    
T  28279737 cttttactgttgttaactcgcgactaggcgcgttgttttta 28279697  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 22389915 - 22389817
Alignment:
Q  232 ttgctaactcacgactaggcgtgttgtttttacatg-attgcataa-ctttccttttc--aaaatctctaaaaaattgttttagtcttggagaattatc 326  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||  |||||||| |||||||| ||||||||| |||||||||||    
T  22389915 ttgctaactcacgactaggagcgttgtttttacatgaattgcataacctttccttttccaaaaatctcaaaaaaattattttagtctcggagaattatc 22389817  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 29709435 - 29709506
Alignment:
Q  67 cctgaaggtttggggttcccagcctcaccttagacaagtgcgtcaagctcgagacgctaaacaaacgttgaa 138  Q
    ||||||| ||||| | ||||| || |||||||||||| || |||||||||||||||||||||||||||||||    
T  29709435 cctgaagttttggagctcccaaccacaccttagacaaatgtgtcaagctcgagacgctaaacaaacgttgaa 29709506  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 42 - 291
Target Start/End: Complemental strand, 1697610 - 1697360
Alignment:
Q  42 agatgaggaagaaaaagacaaggaacctgaaggtttggggttcccagcctcaccttagacaagtgcgtcaagctcgagacgctaaacaaacgttgaaagg 141  Q
    ||||||||| ||| |||||||||||| |||||||||||| |||| |  |||| | ||||||  ||||||||||| ||||| ||||||||  |||||| ||    
T  1697610 agatgaggaggaagaagacaaggaacttgaaggtttgggattcctaaactcaacatagacacatgcgtcaagcttgagactctaaacaagagttgaatgg 1697511  T
Q  142 aaggcaacccatattttta-tttaaagtcatttaagtttcagttatttattttacatagccactcaatctcataatttctttattttattgttgctaact 240  Q
     |||||||||||||||||| ||| |||| |||||| |||||   |||| |||| |||||||||||  ||||| ||||||||| ||||| |||||||||||    
T  1697510 gaggcaacccatatttttattttcaagtaatttaa-tttcaaccatttcttttgcatagccactctttctcacaatttctttcttttactgttgctaact 1697412  T
Q  241 cacgactaggcgtgttgtttttacatg-attgcataactttccttttcaaaa 291  Q
    | || ||| ||   |||| |||||||| ||| ||||||||||| ||||||||    
T  1697411 cgcggctacgcacattgtctttacatgaatttcataactttccctttcaaaa 1697360  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 110 - 291
Target Start/End: Original strand, 24840263 - 24840446
Alignment:
Q  110 caagctcgagacgctaaacaaacgttgaaaggaaggcaacccatattttt-atttaaagtcatttaagtttcagttatttattttacatagccactcaat 208  Q
    ||||||| ||||||||||||| || | || || | | ||||||| ||||| ||||  ||| |||| | ||||||| |||||||||||||||||| || |     
T  24840263 caagctcaagacgctaaacaatcgctaaatgggaagaaacccatttttttcattttcagtaattttaatttcagtcatttattttacatagccattctag 24840362  T
Q  209 ctcataatttctttattttattgttgctaactcacgactaggcgtgttgtttttacat-gattgcataactttccttttcaaaa 291  Q
    ||||||||||||||  |||| ||||| |||||| |||||||| | |||||||||||||  ||||||||||||||  ||||||||    
T  24840363 ctcataatttctttcgtttactgttggtaactcgcgactaggggcgttgtttttacataaattgcataactttctctttcaaaa 24840446  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 16604531 - 16604415
Alignment:
Q  214 aatttctttattttattgtt-gctaactcacgactaggcgtgttgtttttacatg-attgcataa-ctttccttttc--aaaatctctaaaaaattgttt 308  Q
    ||||||||| | |||||||| |||||||| |||||| ||| |||||||||||||| ||||||||| |||||||||||  ||||| || ||||| ||||||    
T  16604531 aatttctttctattattgtttgctaactcccgactacgcgcgttgtttttacatgaattgcataacctttccttttccaaaaatgtcaaaaaatttgttt 16604432  T
Q  309 tagtcttggagaattat 325  Q
    |||||||||| ||||||    
T  16604431 tagtcttggacaattat 16604415  T

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Target: scaffold0043 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 57547 - 57645
Alignment:
Q  232 ttgctaactcacgactaggcgtgttgtttttacatg-attgcataa-ctttccttttc--aaaatctctaaaaaattgttttagtcttggagaattatc 326  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||  ||||| || |||||||| | ||||||| |||||||||||    
T  57547 ttgctaactcacgactaggcgcgttgtttttacatgaattgcataacctttccttttccaaaaatttcaaaaaaattatgttagtctcggagaattatc 57645  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 19709337 - 19709430
Alignment:
Q  189 attttacatagccactcaatctcataatttctttattttattgttgctaactcacgactaggcgtgttgtttttacatg-attgcataactttcc 282  Q
    |||||||||||| | || |||| | ||||||||| |||||||||||||||||| ||||| |||  |||||||||||||| |||||||||| ||||    
T  19709337 attttacatagc-attccatctaacaatttctttcttttattgttgctaactcgcgacttggctcgttgtttttacatgaattgcataaccttcc 19709430  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 16166419 - 16166479
Alignment:
Q  94 ccttagacaagtgcgtcaagctcgagacgctaaacaaacgttgaaaggaaggcaacccata 154  Q
    |||||||||| ||||| || ||||||||||||||||| ||||||| || ||||||||||||    
T  16166419 ccttagacaattgcgttaaactcgagacgctaaacaagcgttgaatgggaggcaacccata 16166479  T

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Target: scaffold1429 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1429
Description:

Target: scaffold1429; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 932 - 837
Alignment:
Q  189 attttacatagccactcaatctcataatttctttattttattgtt-gctaactcacgactaggcgtgttgtttttacatg-attgcataactttcct 283  Q
    |||||||||||| | | ||||| | ||||||||||||||| |||| |||||||||| |||||||  |||||||||||||| |||||||||| |||||    
T  932 attttacatagc-attaaatctaacaatttctttattttactgtttgctaactcactactaggcacgttgtttttacatgaattgcataaccttcct 837  T

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