View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17130_high_39 (Length: 317)
Name: NF17130_high_39
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17130_high_39 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 31564316 - 31564620
Alignment:
| Q |
23 |
acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564316 |
acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca |
31564415 |
T |
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| Q |
123 |
gacaaaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564416 |
gacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt |
31564515 |
T |
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| Q |
219 |
gaatttatacatgtatttcaatttttac------atgtaaaagagaaaaaatgaattatacttccattttgcccatcttctcatattgttttgcctcttg |
312 |
Q |
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| T |
31564516 |
gaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcatattgttttgcctcttg |
31564615 |
T |
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| Q |
313 |
tggat |
317 |
Q |
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||||| |
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| T |
31564616 |
tggat |
31564620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 282
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
| Q |
118 |
cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca |
213 |
Q |
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||||||| ||||||||||||| |||||| ||||||||||||||||| |||| ||||| ||||||||| ||| |||||||||||||||||| |||| |
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| T |
33416536 |
cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca |
33416437 |
T |
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| Q |
214 |
gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt |
282 |
Q |
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| T |
33416436 |
gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt |
33416366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
| Q |
32 |
agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg |
130 |
Q |
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|||||||||||||| |||||||||||||||||||| | | ||||||||| | ||||||| ||||||||||||||||| ||||| | ||||| |||| |
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| T |
33385837 |
agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg |
33385738 |
T |
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| Q |
131 |
ctcgagtaatggtttcaatttcatcttattt |
161 |
Q |
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|| ||| || |||| |||||||||||||||| |
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| T |
33385737 |
cttgagcaaaggttgcaatttcatcttattt |
33385707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
| Q |
47 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac |
106 |
Q |
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|||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
33281376 |
tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac |
33281320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
| Q |
35 |
acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct |
89 |
Q |
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| T |
33416592 |
acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct |
33416538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
| Q |
47 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac |
106 |
Q |
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|||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
33302003 |
tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac |
33301947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
| Q |
127 |
aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat |
222 |
Q |
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||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||| |
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| T |
30653203 |
aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac |
30653301 |
T |
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| Q |
223 |
ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt |
281 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30653302 |
ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt |
30653360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
| Q |
35 |
acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcg |
134 |
Q |
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|||||||||| |||||||||||||||||||| || |||||||| | ||||||| ||||||||||||||| ||||||| ||||||| |||||| | |
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| T |
17443374 |
acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg |
17443473 |
T |
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| Q |
135 |
agtaatggtttcaatttcatcttatttgct |
164 |
Q |
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| T |
17443474 |
accaaaggttgcaatttcatcttatttgct |
17443503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 12876 - 12932
Alignment:
| Q |
47 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac |
106 |
Q |
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|||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
12876 |
tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac |
12932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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