View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17130_high_5 (Length: 440)
Name: NF17130_high_5
Description: NF17130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17130_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 222 - 421
Target Start/End: Original strand, 39902245 - 39902444
Alignment:
| Q |
222 |
ctacctcaatattgcttttcaacctgtttggaggtatgatccatttgaccaaatctacccgtggccaagctacaatcgtgtttgagtcttgcaatctcat |
321 |
Q |
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| T |
39902245 |
ctacatcaatattgcttttcaacctgtttggaggtatgatccatttgaccaaatctacccgtggccaagctacaatcgtgtttgagtcttgcaatctcat |
39902344 |
T |
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| Q |
322 |
ccattgccattgattgaggaatgcataatgttgatatatagtcctaacaacttcatcaatctcttctcaaagcttcaaactacaactttcccacaggttc |
421 |
Q |
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| T |
39902345 |
ccattgccattgattgaggaatgcataatgttgatatatagtcctaacaacttcatcaatctcttctcaaagcttcaaactacaactttcccacaggttc |
39902444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 39901979 - 39902097
Alignment:
| Q |
51 |
ctcatgaaatgtaataattagtttgccttttagtaaactcaatcatcgagtttggataaaccaaccaaaataagataaaatttatgcatcaagtttaaaa |
150 |
Q |
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| T |
39901979 |
ctcatgaaatgtaataattagtttgccttttagtaaactcaatcatcgagtttggataaaccaaccaaaataagataaaatttatgcatcaagtttaaaa |
39902078 |
T |
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| Q |
151 |
tcaacatcttcaacctcat |
169 |
Q |
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| T |
39902079 |
tcaacatcttcaacctcat |
39902097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 39902113 - 39902147
Alignment:
| Q |
191 |
cttttagtgaacccatgagcctacgcctcttctac |
225 |
Q |
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| T |
39902113 |
cttttagtgaacccatgagcctacgcctcttctac |
39902147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 39901979 - 39902012
Alignment:
| Q |
165 |
ctcatgaaatgtaataattagtttgccttttagt |
198 |
Q |
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| T |
39901979 |
ctcatgaaatgtaataattagtttgccttttagt |
39902012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 39902065 - 39902097
Alignment:
| Q |
23 |
catcaagtttaaaatcaacatcttcaacctcat |
55 |
Q |
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| T |
39902065 |
catcaagtttaaaatcaacatcttcaacctcat |
39902097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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